Man pages for sinnweja/panoply
Personalized Cancer Report
| clinPanCO | Clinical Data for TCGA Colon Cancer Patients |
| clinPanTNBC | Clinical Data for Breast Cancer Subjects |
| cnaPanCO | DNA CNV (germline) and CNA (tumor) data for the TCGA Colon... |
| cnaPanTNBC | DNA CNV (germline) and CNA (tumor) data for TCGA samples |
| dgidbPan | Druggable Genome Interaction Database for Cancer |
| dgiSets | Druggable Genome Interaction Database for Cancer |
| gcinfoPan | Gene information data for 7574 genes |
| gcPanCO | Dataset with cqn-normalized RNA gene count data for TCGA... |
| gcPanTNBC | Dataset with cqn-normalized RNA gene count data for TCGA... |
| genelistPan | Curated Cancer Gene list for panoply |
| panCircos | plot method for panPath/panDruggable objects |
| panDrugGraph | Drug Network Graph |
| panDrugSets | Tests on drugs for their effectiveness in targeting cancer... |
| panGeneGraph | Creates reactome network graph for Genes connected to top... |
| panGeneSets | Test gene networks for a set of cases versus a set of... |
| variantPanTNBC | Dataset with somatic and germline DNA variants for TCGA... |
