Description Usage Format Details Examples
Dataset with somatic and germline DNA variants for TCGA patients patients
1 | data("variantPanTNBC")
|
A data frame with the following columns:
Gene.Symbol
Gene Symbol
CHROM
Chromosome
POS
Start Position
Stop
Stop Position
Ref
Reference Allele
Alt
Alternate Allele
Effect
Effect
PatientID
Patient ID
V1B.refDP
Germline Reference allele depth
V1B.altDP
Germline Alternate allele depth
V1T.refDP
Tumor Reference allele depth
V1T.altDP
Tumor Alternate allele depth
AD
AD
GT
Genotype
SampleType
Sample Type Blood
Tissue
Non-synonymous somatic variants, and high-impact germline variants.
1 2 |
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