variantPanTNBC: Dataset with somatic and germline DNA variants for TCGA...
In sinnweja/panoply: Personalized Cancer Report
Description
Usage
Format
Details
Examples
Description
Dataset with somatic and germline DNA variants for TCGA patients
patients
Usage
1
data("variantPanTNBC")
Format
A data frame with the following columns:
Gene.SymbolGene Symbol
CHROMChromosome
POSStart Position
StopStop Position
RefReference Allele
AltAlternate Allele
EffectEffect
PatientIDPatient ID
V1B.refDPGermline Reference allele depth
V1B.altDPGermline Alternate allele depth
V1T.refDPTumor Reference allele depth
V1T.altDPTumor Alternate allele depth
ADAD
GTGenotype
SampleTypeSample Type Blood Tissue
Details
Non-synonymous somatic variants, and high-impact germline variants.
Examples
1
2
sinnweja/panoply documentation built on Aug. 9, 2019, 9:56 a.m.
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Description Usage Format Details Examples
Description
Dataset with somatic and germline DNA variants for TCGA patients patients
Usage
1 | data("variantPanTNBC")
|
Format
A data frame with the following columns:
Gene.SymbolGene Symbol
CHROMChromosome
POSStart Position
StopStop Position
RefReference Allele
AltAlternate Allele
EffectEffect
PatientIDPatient ID
V1B.refDPGermline Reference allele depth
V1B.altDPGermline Alternate allele depth
V1T.refDPTumor Reference allele depth
V1T.altDPTumor Alternate allele depth
ADAD
GTGenotype
SampleTypeSample Type
BloodTissue
Details
Non-synonymous somatic variants, and high-impact germline variants.
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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