variantPanTNBC: Dataset with somatic and germline DNA variants for TCGA...

Description Usage Format Details Examples

Description

Dataset with somatic and germline DNA variants for TCGA patients patients

Usage

1
data("variantPanTNBC")

Format

A data frame with the following columns:

Gene.Symbol

Gene Symbol

CHROM

Chromosome

POS

Start Position

Stop

Stop Position

Ref

Reference Allele

Alt

Alternate Allele

Effect

Effect

PatientID

Patient ID

V1B.refDP

Germline Reference allele depth

V1B.altDP

Germline Alternate allele depth

V1T.refDP

Tumor Reference allele depth

V1T.altDP

Tumor Alternate allele depth

AD

AD

GT

Genotype

SampleType

Sample Type Blood Tissue

Details

Non-synonymous somatic variants, and high-impact germline variants.

Examples

1
2

sinnweja/panoply documentation built on Aug. 9, 2019, 9:56 a.m.