API for sipss/AlpsLCMS
Signal processing of LC-MS metabolomics
| Global functions | |
|---|---|
| %>% | Man page |
| HMDB_db | Man page |
| IPO_group_peaks | Man page |
| PeakDensityPar | Man page Source code |
| PeakGroupsPar | Man page Source code |
| adjustRT | Man page Source code |
| assignation_neg_HMDB | Man page Source code |
| assignation_pos_HMDB | Man page Source code |
| bp_VIP_analysis | Man page Source code |
| bp_kfold_VIP_analysis | Man page Source code |
| callback_outer_cv_auroc_vip | Source code |
| callback_plsda_auroc_vip | Source code |
| check_dataset | Man page Source code |
| cluster | Man page |
| clustering | Man page Source code |
| convert_samples | Source code |
| cromplot | Man page Source code |
| default_peakpicking_params | Man page Source code |
| do_cv | Source code |
| do_findmain | Man page Source code |
| feature_reduction | Man page |
| feature_values | Man page Source code |
| filterMassAcquisition | Man page |
| find_peaks_cwp | Man page |
| fun_choose_best_ncomp_auc_threshold | Source code |
| getRamSt | Man page Source code |
| groupPeaks | Man page Source code |
| install_RawConverter | Man page Source code |
| is.negative | Man page |
| is.positive | Man page |
| known_metabolites | Man page Source code |
| lcms_SearchCand | Source code |
| lcms_convert_ipo_to_xcms | Man page Source code |
| lcms_data_analysis | Man page Source code |
| lcms_data_analysis_method | Man page |
| lcms_dataset_load | Man page Source code |
| lcms_dataset_save | Man page Source code |
| lcms_default_retcorgroup_params | Man page Source code |
| lcms_diagnose | Man page Source code |
| lcms_diagnose<- | Man page |
| lcms_fill_chrom_peaks | Man page Source code |
| lcms_filter_mz | Man page Source code |
| lcms_filter_polarity | Man page Source code |
| lcms_filter_rt_min | Man page |
| lcms_filter_sample_type | Man page Source code |
| lcms_identify_metabolites | Man page Source code |
| lcms_list_mzxml_samples | Man page Source code |
| lcms_meta_add | Man page Source code |
| lcms_meta_export | Man page Source code |
| lcms_meta_read | Man page Source code |
| lcms_peak_aggregation | Source code |
| lcms_peak_annotation | Man page |
| lcms_peak_table_boxplots | Man page |
| lcms_peak_table_pca | Man page |
| lcms_plot_chrom | Man page |
| lcms_plot_chrom_peak_image | Man page |
| lcms_plot_metabolites | Man page Source code |
| lcms_plot_tics | Man page Source code |
| lcms_raw_data | Man page |
| lcms_raw_to_mzxml | Man page Source code |
| lcms_read_ipo_to_xcms | Man page Source code |
| lcms_read_samples | Man page Source code |
| lcms_rearrange_datafiles_by_class | Man page Source code |
| lcms_retcorgroup_optimization | Man page |
| lcms_retention_time_alignment_plot | Man page |
| lcms_sig_peaks_table | Man page Source code |
| lcms_spectral_sig_features | Man page Source code |
| lcms_spectral_tstudent | Source code |
| lcms_spectral_welch | Source code |
| lcms_spectral_wilcox | Source code |
| lcms_tics | Man page Source code |
| lcms_to_mait | Man page |
| lcms_write_opt_params | Man page Source code |
| lcms_write_parameter_table | Man page Source code |
| list_of_lists_to_tibble | Source code |
| models_stability_plot_bootstrap | Man page |
| models_stability_plot_plsda | Man page |
| multicore | Man page |
| multiprocess | Man page |
| multisession | Man page |
| new_lcms_data_analysis_method | Man page Source code |
| obiAdjust_Rtime | Man page |
| peakpicking_optimization | Man page |
| permutation_test_model | Man page |
| permutation_test_plot | Man page |
| phData | Man page |
| plan | Man page |
| plot_bootstrap_multimodel | Man page Source code |
| plot_plsda_multimodel | Man page Source code |
| plot_plsda_samples | Man page Source code |
| plot_vip_scores | Man page Source code |
| plsda_auroc | Source code |
| plsda_auroc_vip_compare | Man page Source code |
| plsda_auroc_vip_method | Man page Source code |
| plsda_build | Source code |
| plsda_vip | Source code |
| random_subsampling | Man page Source code |
| reexports | Man page |
| remote | Man page |
| sequential | Man page |
| setup_RawConverter | Source code |
| setup_msfilereader | Source code |
| setup_wineprefix | Source code |
| setup_wineprefix_env | Source code |
| show_progress_bar | Source code |
| split_build_perform | Source code |
| split_double_cv | Source code |
| tibble_lists_columns_to_vector_columns | Source code |
