lcms_retention_time_alignment_plot: Retention Time Correction Plot

In sipss/AlpsLCMS: Signal processing of LC-MS metabolomics

Description

It plots the retention time correction vs the original retention time for each of the samples coloured by sample class.

Usage

lcms_retention_time_alignment_plot(data)

Arguments

data	An alignend lcms_dataset.

Value

The plot for the retention time correction.

See Also

Other dataset functions: IPO_group_peaks(), find_peaks_cwp(), lcms_dataset_load(), lcms_dataset_save(), lcms_fill_chrom_peaks(), lcms_filter_mz(), lcms_filter_polarity(), lcms_filter_rt_min(), lcms_filter_sample_type(), lcms_meta_add(), lcms_meta_export(), lcms_plot_chrom_peak_image(), lcms_plot_tics(), lcms_rearrange_datafiles_by_class(), lcms_tics(), obiAdjust_Rtime(), peakpicking_optimization(), phData()

Other retention time correction functions: obiAdjust_Rtime()

Other visualization functions: lcms_peak_table_boxplots(), lcms_peak_table_pca(), lcms_plot_chrom_peak_image(), lcms_plot_chrom(), lcms_plot_tics(), lcms_retcorgroup_optimization(), peakpicking_optimization()

Examples

## Not run: 
file_name <-  system.file("extdata", "peakdet_align.rds", package = "AlpsLCMS")
data <- base::readRDS(file_name)
rta_plot <- lcms_retention_time_alignment_plot(data)
print(rta_plot)

## End(Not run)

sipss/AlpsLCMS documentation built on May 13, 2021, 6:18 p.m.