Files in sirusb/R3CPET
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
DESCRIPTION
NAMESPACE
R/AllClasses.r
R/AllGenerics.r
R/ChiapetExperimentData-methods.r
R/ChromMaintainers-methods.r
R/DAVIDQuery.r
R/HLDAResult-methods.R
R/NetworkCollection-methods.r
R/PrepareData.r
R/RcppExports.R
R/WebGenerator-methods.r
R/helper-DavidGOEnrich.R
R/helper-GeneNameConversion.R
R/helpers-utils.R
README.md
data/Biogrid.RData
data/HPRD.RData
data/RPKMS.RData
data/chromosoms.RData
data/datalist
data/geneLocations.RData
inst/CITATION
inst/NEWS
inst/doc/R3CPET.R
inst/doc/R3CPET.Rnw
inst/doc/R3CPET.pdf
inst/example/HepG2_TF.txt.gz
inst/example/HepG2_centered.bed
inst/example/HepG2_interactions.txt
inst/example/hlda.RData
inst/example/nets.RData
inst/www/d3.min.js
inst/www/graph.js
inst/www/server.R
inst/www/ui.R
man/Biogrid.Rd
man/ChiapetExperimentData-class.Rd
man/ChromMaintainers-class.Rd
man/CreateCenteredBED-methods.Rd
man/EnsemblToHGNC.Rd
man/EntrezToHGNC.Rd
man/GOEnrich-methods.Rd
man/GenerateNetworks-methods.Rd
man/HLDAResult-class.Rd
man/HPRD.Rd
man/InferNetworks-methods.Rd
man/NetworkCollection-class.Rd
man/PrepareData-methods.Rd
man/R3CPET-package.Rd
man/RPKMS.Rd
man/annotateExpression-methods.Rd
man/buildNetworks-methods.Rd
man/chromosoms.Rd
man/cluesOrSota-class.Rd
man/clusterInteractions-methods.Rd
man/createIndexes-methods.Rd
man/createServer-methods.Rd
man/geneLocations.Rd
man/getRegionsInNetwork-methods.Rd
man/getRegionsIncluster-methods.Rd
man/loadPETs-methods.Rd
man/loadPPI-methods.Rd
man/loadTFBS-methods.Rd
man/outputGenesPerClusterToDir-methods.Rd
man/outputGenesPerNetworkToDir-methods.Rd
man/plotRes-methods.Rd
man/plotTrack.Rd
man/updateResults-methods.Rd
man/visualizeCircos-methods.Rd
man/visualizeInteractions-methods.Rd
src/Makevars
src/Makevars.win
src/R3CPET_init.c
src/RcppExports.cpp
src/corpus.cpp
src/corpus.h
src/main.cpp
src/state.cpp
src/state.h
src/stirln.cpp
src/stirln.h
src/utils.cpp
src/utils.h
tests/tests.R
vignettes/HLDA.pdf
vignettes/Network_Construction.png
vignettes/NetworksEnrich.pdf
vignettes/R3CPET.Rnw
vignettes/cluster_GO.png
vignettes/rawData_selection.png
vignettes/resultsClusters_selection.png
vignettes/resultsNetwork_selection.png
vignettes/resultsNetworks_3ds.png
