R3CPET-package: 3CPET: Finding Co-factor Complexes in Chia-PET experiment...
In sirusb/R3CPET: 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
Description
Details
Author(s)
References
See Also
Description
The main goal of 3CPET is to try to infer the set of protein networks that are likely to work together inorder to maintain chromatin loops obtained by a ChIA-PET experiment.
It is based on an idea silimar to the one used for document classification. It starts first by building a PPI network for each chromatin interaction, then uses an HDLA (Hierarchical Dirichlet Latent Allocation) model to infer the set of networks that are enriched together.
Details
Package: R3CPET
Type: Package
Version: 1.0
Date: 2013-11-23
License: GPL (>= 3.0)
Author(s)
Written by M.N.Djekidel
Maintainer: Mohamed Nadhir Djekidel <nde12@mails.tsinghua.edu.cn>
References
M.N Djekidel et al,3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process, in press, 2015
See Also
ChiapetExperimentData, ChromMaintainers , HLDAResult
sirusb/R3CPET documentation built on Oct. 12, 2020, 6 p.m.
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Description Details Author(s) References See Also
Description
The main goal of 3CPET is to try to infer the set of protein networks that are likely to work together inorder to maintain chromatin loops obtained by a ChIA-PET experiment. It is based on an idea silimar to the one used for document classification. It starts first by building a PPI network for each chromatin interaction, then uses an HDLA (Hierarchical Dirichlet Latent Allocation) model to infer the set of networks that are enriched together.
Details
| Package: | R3CPET |
| Type: | Package |
| Version: | 1.0 |
| Date: | 2013-11-23 |
| License: | GPL (>= 3.0) |
Author(s)
Written by M.N.Djekidel Maintainer: Mohamed Nadhir Djekidel <nde12@mails.tsinghua.edu.cn>
References
M.N Djekidel et al,3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process, in press, 2015
See Also
ChiapetExperimentData, ChromMaintainers , HLDAResult
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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