Files in sistm/SEIRcovid19

Interface Monolix for multilevel modeling of epidemic dynamics

LICENSE.md MonolixFile/MainFromMaria/Di5_2betas_Poisson.R MonolixFile/TablesFigures_Biometrics.R MonolixFile/fourstepEAKalman_small.R MonolixFile/outputMonolix/fourstepEAKalman_small/graphics/ArticlePlot.pdf MonolixFile/outputMonolix/fourstepEAKalman_small/graphics/Fit_Biom.pdf MonolixFile/outputMonolix/fourstepEAKalman_small/graphics/LongTermSolution.pdf MonolixFile/outputMonolix/fourstepEAKalman_small/graphics/R0Plot.pdf MonolixFile/outputMonolix/fourstepEAKalman_small/graphics/SPFpred.pdf MonolixFile/outputMonolix/fourstepEAKalman_small/graphics/map.pdf R/ComputeConfidenceInterval.R R/ComputeConfidenceIntervalAllId.R R/ComputeEstimationAllId.R R/CreateFilesFromMonolixEstimation.R R/DataExtractionRoutine.R R/Dept_stations_pop.R R/Estimate.R R/EstimateLongTerm.R R/GetAttackRateAtInfinity.R R/GetAttackRateAtSpecificDate.R R/GetR0AtSpecificDate.R R/GetRegressorName.R R/GetSpecificInitState.R R/GetTableOptimizeParam.R R/ICUcapacity_FR.R R/ImportSivic.R R/LaunchMonolix.R R/OdeSystem.R R/PlotArticleFit.R R/PlotArticleR0.R R/PlotR0.R R/PlotSolutionLongTerm.R R/PlotSolutionOverObservation.R R/Regions_stations_pop.R R/SetAllInit.R R/SetAllParameter.R R/SetConfidenceInverval.R R/SetDataInput.R R/SetInitDistribution.R R/SetInitEstimationRegressor.R R/SetInitIsRegressor.R R/SetInitVariability.R R/SetModelFile.R R/SetNumberObservation.R R/SetParamDistribution.R R/SetParamEstimationRegressor.R R/SetParamIsRegressor.R R/SetParamRandomEffect.R R/SetParamVariability.R R/SetSomeInit.R R/SetSomeParameter.R R/SetSpecificInit.R R/SetSpecificInitState.R R/SolveThroughSimulx.R R/UpdateOdeSystem.R R/WriteEstimationModel.R R/WriteEstimationModelLongTerm.R R/WriteMonolixModel.R R/biom_kalman.R R/french_regions_map.R R/full_region_names.R R/fun_weighted_daily_obs.R R/geodesSPF.R R/getDataSIVIC.R R/getEpidemicsStarts.R R/getPopulationSize.R R/get_data_covid19.R R/get_data_covid19_hierar_bylevel.R R/get_data_covid19_hierarchical.R R/getlockdownInfo.R R/getlockdownInfoReconf.R R/getrsent.R R/hiddenCall.R R/logit.R R/mlxtran_solve_simulx.R R/ode_solve_simulx.R R/opencovid19_FR.R R/plot.seirah_solve.R R/popreg.R R/prepare4Monolix.R R/prepare_data_4monolix.R R/seirah_ode.R R/seirah_ode2.R R/seirah_ols.R R/seirah_solve.R R/seirah_solve_simulx.R R/sivic.R R/sursaudVSspf.R R/sursaud_covid19.R R/weather_data_dep.R R/weather_data_from_NOAA.R R/weather_data_reg.R README.Rmd README.md man/ICUcapacity_FR.Rd man/expit.Rd man/french_regions_map.Rd man/get_data_covid19.Rd man/get_data_covid19_hierar_bylevel.Rd man/get_data_covid19_hierarchical.Rd man/logit.Rd man/opencovid19_FR.Rd man/plot.seidrah_solve.Rd man/plot.seirah_solve.Rd man/popreg.Rd man/seirah_ode.Rd man/seirah_ode2.Rd man/seirah_ols.Rd man/seirah_solve.Rd man/sursaud_covid19.Rd