table_GS: General FingerPrintplot, for BTM and Chaussabel modules

In sistm/sistmr: A Collection of Utility Functions from the Inserm/Inria SISTM Team

General FingerPrintplot, for BTM and Chaussabel modules

Description

General FingerPrintplot, for BTM and Chaussabel modules

Usage

table_GS(res_dgsaseq, data_log2FC, time = NULL, geneset_modules)

Arguments

res_dgsaseq	an object of dgsa_seq function in dearseq package.
data_log2FC	a data.frame with genes in rownames and if (time == NULL) 1 column with Fold Change else several columns are allowed but colnames must contain time's string characters.
time	a string character to filter on time. This time must be present on datalog2FC's colnames. Default is NULL.
geneset_modules	a string character "BTM" or "Chaussabel" to use genesets included or an other gmt object. Default is Chaussabel.

Value

a data.frame object

sistm/sistmr documentation built on June 11, 2025, 1:33 a.m.