signalnoise: Convert Fasta Formatted Files From .2bit
In sivarajankumar/zinba: ZINBA: Zero-Inflation Negative Binomial Algorithm
Description
Usage
Arguments
See Also
Examples
Description
Computes Signal to Noise information for a given basecountfile. The log ratio of the max to median basecount in every window is computed, and the summary information including the mean and median log ratio is given. Higher mean values of this log ratio is a crude measure of better signal to noise.
Usage
1
signalnoise(inputfile,twoBitFile,winSize=100000)
Arguments
inputfile
Path to basecountfile to be analyzed
twoBitFile
Path to corresponding genome in .2bit format
winSize
Window Size for analysis, default is 100kb
See Also
save.
Examples
1
2
3
signalnoise('data/faireGM12878rep1chr22.basecount', 'hg18.2bit', winSize=5000)
sivarajankumar/zinba documentation built on May 29, 2019, 10:11 p.m.
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Description Usage Arguments See Also Examples
Description
Computes Signal to Noise information for a given basecountfile. The log ratio of the max to median basecount in every window is computed, and the summary information including the mean and median log ratio is given. Higher mean values of this log ratio is a crude measure of better signal to noise.
Usage
1 | signalnoise(inputfile,twoBitFile,winSize=100000)
|
Arguments
inputfile |
Path to basecountfile to be analyzed |
twoBitFile |
Path to corresponding genome in .2bit format |
winSize |
Window Size for analysis, default is 100kb |
See Also
save.
Examples
1 2 3 | signalnoise('data/faireGM12878rep1chr22.basecount', 'hg18.2bit', winSize=5000)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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