DiagMultiKPlot: Make MultiK diagnostic plots
In siyao-liu/MultiK: Objectively selects multiple insightful numbers of clusters K from single cell RNA-seq data.
Description
Usage
Arguments
Value
View source: R/MultiK_Helper.R
View source: R/DiagMultiKPlot.R
Description
Takes the output from MultiK() function, and generate diagnostic plots for determining optimal Ks
Usage
1
DiagMultiKPlot(ks, res)
Arguments
ks
A vector of the number of clustering runs for each K
res
A list of consensus matrix for each K
Value
A bar plot of the frequency of K, a plot of rPAC score for each K, and a scatterplot of (1-rPAC) vs. the frequency of K
siyao-liu/MultiK documentation built on Feb. 6, 2022, 1:42 a.m.
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Description Usage Arguments Value
View source: R/MultiK_Helper.R View source: R/DiagMultiKPlot.R
Description
Takes the output from MultiK() function, and generate diagnostic plots for determining optimal Ks
Usage
1 | DiagMultiKPlot(ks, res)
|
Arguments
ks |
A vector of the number of clustering runs for each K |
res |
A list of consensus matrix for each K |
Value
A bar plot of the frequency of K, a plot of rPAC score for each K, and a scatterplot of (1-rPAC) vs. the frequency of K
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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