PlotSigClust: Plot cluster centroids dendrogram and overlay P-values from...

Description Usage Arguments Value

View source: R/PlotSigClust.R View source: R/MultiK_Helper.R

Description

Generate a dendrogram of cluster centroids on the left, with nodes indicating the significance of the P-values from the pairwise SigClust tests. On the right is a heatmap of P-values from the pairese SigClust tests. The assignment of classes and subclasses is determined by the shape of the nodes. Classes are indicated by closed circles, and subclasses are indicated by open circles.

Usage

1
PlotSigClust(seu, clusters, pval)

Arguments

seu

A Seurat object

clusters

A vector of clustering labels

pval

A matrix of P values from pairwise SigClust tests

Value

A diagnostic plot that shows the SigClust results


siyao-liu/MultiK documentation built on Feb. 6, 2022, 1:42 a.m.