PlotSigClust: Plot cluster centroids dendrogram and overlay P-values from...
In siyao-liu/MultiK: Objectively selects multiple insightful numbers of clusters K from single cell RNA-seq data.
Description
Usage
Arguments
Value
View source: R/PlotSigClust.R
View source: R/MultiK_Helper.R
Description
Generate a dendrogram of cluster centroids on the left, with nodes indicating the significance of the P-values from the pairwise SigClust tests. On the right is a heatmap of P-values from the pairese SigClust tests. The assignment of classes and subclasses is determined by the shape of the nodes. Classes are indicated by closed circles, and subclasses are indicated by open circles.
Usage
1
PlotSigClust(seu, clusters, pval)
Arguments
seu
A Seurat object
clusters
A vector of clustering labels
pval
A matrix of P values from pairwise SigClust tests
Value
A diagnostic plot that shows the SigClust results
siyao-liu/MultiK documentation built on Feb. 6, 2022, 1:42 a.m.
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Description Usage Arguments Value
View source: R/PlotSigClust.R View source: R/MultiK_Helper.R
Description
Generate a dendrogram of cluster centroids on the left, with nodes indicating the significance of the P-values from the pairwise SigClust tests. On the right is a heatmap of P-values from the pairese SigClust tests. The assignment of classes and subclasses is determined by the shape of the nodes. Classes are indicated by closed circles, and subclasses are indicated by open circles.
Usage
1 | PlotSigClust(seu, clusters, pval)
|
Arguments
seu |
A Seurat object |
clusters |
A vector of clustering labels |
pval |
A matrix of P values from pairwise SigClust tests |
Value
A diagnostic plot that shows the SigClust results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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