H3K4me3: H3K4me3 peak calls in a short region for six adult tissues

In sjessa/chromswitch: An R package to detect chromatin state switches from epigenomic data

H3K4me3 peak calls in a short region for six adult tissues

Description

A toy dataset containing MACS2 narrow peak calls for 3 brain tissues and 3 other adult tissues from the Roadmap Epigenomics Project, restricted to a short region on chromosome 19. The generation of this dataset is executed by the script in the "data-raw" directory of this package, which can be viewed at https://github.com/selinj/chromswitch/tree/master/data-raw.

Usage

H3K4me3

Format

A list with six entries, named according to IDs of the samples. Each element contains a GRanges object with peak calls and associated statistics which are computed by MACS2. This is the format expected by the peaks argument in functions in chromswitch.

Source

egg2.wustl.edu/roadmap/web_portal/

sjessa/chromswitch documentation built on Feb. 4, 2024, 2:04 a.m.