initialize_agent_array: Initialize array for agent simulations

In skgallagher/EpiCompare: A Pipeline to Analyze and Compare Infectious Disease Epidemics

Description

Initialize array for agent simulations

Usage

initialize_agent_array(
  init_vals,
  max_T,
  n_sims,
  birth_dates = NULL,
  birth_states = NULL
)

Arguments

init_vals	vector of length K corresponding to the initial values in each state. This will be over-ridden by birth_dates and birth_states if those are not NULL.
max_T	total number of discrete time steps
n_sims	number of simulations to run
birth_dates	vector of size N, the maximum number of agents where each entry is the 'birth' of the agent into the system
birth_states	which state an agent begins when born into the system

Value

n_sims x n_agents x (max_T + 1) array where entry ijt is the state of agent j in simulation i at time t-1. The states they can take are integers between -1 (not born yet) and K-1 where 0 to K-1 correspond to different states.

skgallagher/EpiCompare documentation built on Sept. 14, 2021, 5:45 a.m.