pomp_sir: pomp_sir Example output from the 'pomp' package.

In skgallagher/EpiCompare: A Pipeline to Analyze and Compare Infectious Disease Epidemics

Description

Specifcially, this data is made from the SIR example found from this pomp vignette. The output format for the data is data.frame. This data set is a data frame with dimensions 52100 x 7. Each row consists of the time, number of individuals in each state, and simulation ID. The birth and death rates have been set to zero.

Usage

pomp_sir

Format

A 52100 x 7 data.frame where each row is a time and the number of individuals in each state at that time. The columns include

time

possibly continuous, greater than 0

.id

the simulation ID

S

the number of Susceptible at the given time

I

the number of Infectious at the given time

R

the number of Recovered at the given time

H

the number of new incidence

cases

the number of cases recorded within a given reporting interval

Examples

## Show the first 6 lines
head(pomp_sir)

skgallagher/EpiCompare documentation built on Sept. 14, 2021, 5:45 a.m.