Man pages for skinnider/flavin
A fast library for automated validation of interaction networks
| as_annotation_list | Convert an annotation data.frame to a named list, where the... |
| coexpression_enrichment | Calculate a Z score for enrichment for coexpression |
| filter_breadth | Filter very broad or very specific GO terms from a GOA file. |
| filter_roots | Filter GO terms from a particular ontological category (BP,... |
| network_coexpression | Calculate coexpression of network nodes |
| network_shared_annotations | Calculate shared annotations between network nodes |
| read_gaf | Read a GAF file |
| read_gpa | Read a GPA file |
| shared_annotation_enrichment | Calculate a Z score for enrichment for shared annotations |
| shared_annotations | Construct a matrix of shared annotation counts |
| shared_pairwise_annotations | Construct a matrix of shared pairwise annotation counts |
| to_adjacency_matrix | Convert a data frame to an adjacency matrix |
