filter_breadth: Filter very broad or very specific GO terms from a GOA file.
In skinnider/flavin: A fast library for automated validation of interaction networks
Description
Usage
Arguments
Value
Examples
View source: R/filter_breadth.R
Description
Filter very broad or very specific GO terms from a GOA file.
Usage
1
filter_breadth(goa, min.breadth = 20, max.breadth = 1000)
Arguments
min.breadth
minimum size of a GO group to consider
max.breadth
maximum size of a GO group to consider
go
the GOA file, read with 'read_gpa'
Value
the filtered GPA file
Examples
1
2
3
4
# read a GOA file
go <- read_gpa("goa_human.gpa.gz")
# get GO terms annotated to between 30 and 100 proteins
bp <- filter_breadth(go, min.breadth = 30, max.breadth = 100)
skinnider/flavin documentation built on May 6, 2019, 10:49 a.m.
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Description Usage Arguments Value Examples
View source: R/filter_breadth.R
Description
Filter very broad or very specific GO terms from a GOA file.
Usage
1 | filter_breadth(goa, min.breadth = 20, max.breadth = 1000)
|
Arguments
min.breadth |
minimum size of a GO group to consider |
max.breadth |
maximum size of a GO group to consider |
go |
the GOA file, read with 'read_gpa' |
Value
the filtered GPA file
Examples
1 2 3 4 | # read a GOA file
go <- read_gpa("goa_human.gpa.gz")
# get GO terms annotated to between 30 and 100 proteins
bp <- filter_breadth(go, min.breadth = 30, max.breadth = 100)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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