response: response objects

In skiptoniam/bbgdm: Bayesian Bootstrap Generalised Dissimilarity Models.

Description

extracts spline reponses from bbgdm object and plots them.

Usage

as.response(object)

is.response(x)

## S3 method for class 'response'
plot(x, ...)

Arguments

object	As derived from bbgdm function.
x	response object created using as.response
...	pass further arguments to plot().

Value

values for plotting spline responses from bbgdm.

Examples

# fit bbgdm and extract spline responses.
x <-matrix(rbinom(1:100,1,.6),10,10)# presence absence matrix
y <- simulate_covariates(x,2)
form <- ~ 1 + covar_1 + covar_2
test.bbgdm <- bbgdm(form, sp.dat=x, env.dat=y,family="binomial",
                   geo=FALSE,dism_metric="number_non_shared", nboot=10)
responses <- as.response(test.bbgdm)

# Did as.response work?
is.response(responses)

# plot responses
par(mfrow=c(1,2))
plot(responses)

skiptoniam/bbgdm documentation built on May 30, 2019, 1:05 a.m.