Man pages for slowkow/CENTIPEDE.tutorial
A tutorial for running CENTIPEDE.
| cen | A dataset ready to use with CENTIPEDE. |
| centipede_data | Count readstarts at each nucleotide position in each BED... |
| fitAndPlot | Fit a motif with CENTIPEDE and plot the profile and posterior... |
| parse_region | Parse a genomic region into parts. |
| read_bedGraph | Read a bedGraph file with 4 columns: chrom, start, end, score |
| read_fimo | Read a text file output by FIMO and select sites that meet a... |
| site_cons | A vector of mean conservation scores for the PWM sites in... |
