read_fimo: Read a text file output by FIMO and select sites that meet a...

Description Usage Arguments Details Value

View source: R/functions.R

Description

Read a text file output by FIMO and select sites that meet a significance threshold.

Usage

1
read_fimo(fimo_file, pvalue = 1e-04, ...)

Arguments

fimo_file

A FIMO text file with PWM match sites.

pvalue

Select FIMO matches with p-value less than this.

Details

For sites represented multiple times, the one with the maximum score is selected.

Value

A dataframe with one row per site.


slowkow/CENTIPEDE.tutorial documentation built on March 20, 2018, 3:23 p.m.