analyze_uridylation: Analyze uridylation

In smaegol/raceseq_scripts: Race-Seq analysis

Description

Analyze uridylation

Usage

analyze_uridylation(dataset, transcript2, exp_type2,
  mapping_position_min = NA, mapping_position_max = NA, project = NA,
  facet_projects = FALSE, conditions = NA, include_jitter = TRUE)

Arguments

dataset	- dataset to analyze
transcript2	- transcript to analyze
exp_type2	- experiment type (OVR,KD,LEAP,NT)
mapping_position_min	- min position of mapping in the reference
mapping_position_max	- max position of mapping in the reference
project	- project (project_name) to include in the analysis (character of character vector)
facet_projects	- make facets based on projects (T/F)
conditions	- filter for selected conditions (character vector)

Value

- list containing calculated uridylation data (calculated output), Dunn test results and lot

Examples

analyze_uridylation(all_data,"ACTB","OVR",project=c("Tailseq_4","Tailseq_5"),facet_projects==TRUE,conditions=c("CNTRL","TUT4WT","TUT7WT","MOV10"))

smaegol/raceseq_scripts documentation built on May 28, 2019, 5:40 p.m.