Files in smgogarten/SeqVarTools

Tools for variant data

R/AllClasses.R R/AllGenerics.R R/AllUtilities.R R/Methods-Iterator.R R/Methods-SeqVarData.R R/Methods-SeqVarGDSClass.R R/alternateAlleleDetection.R R/chromWithPAR.R R/duplicateDiscordance.R R/hwe.R R/inbreedCoeff.R R/mendelErr.R R/pca.R R/refFrac.R R/regression.R R/setVariantID.R README.md inst/unitTests/test_Iterator.R inst/unitTests/test_SeqVarData.R inst/unitTests/test_VariableLength.R inst/unitTests/test_alleleFrequency.R inst/unitTests/test_alleles.R inst/unitTests/test_alternateAlleleDetection.R inst/unitTests/test_applyMethod.R inst/unitTests/test_countSingletons.R inst/unitTests/test_dosage.R inst/unitTests/test_duplicateDiscordance.R inst/unitTests/test_getData.R inst/unitTests/test_hethom.R inst/unitTests/test_hwe.R inst/unitTests/test_inbreedCoeff.R inst/unitTests/test_meanBySample.R inst/unitTests/test_mendelErr.R inst/unitTests/test_missingGenotypeRate.R inst/unitTests/test_parallel.R inst/unitTests/test_pca.R inst/unitTests/test_refFrac.R inst/unitTests/test_regression.R inst/unitTests/test_setVariantID.R inst/unitTests/test_sparse.R inst/unitTests/test_titv.R inst/unitTests/test_utils.R man/Iterator-class.Rd man/SeqVarData-class.Rd man/SeqVarTools-package.Rd man/allele-methods.Rd man/alleleFrequency.Rd man/alternateAlleleDetection.Rd man/applyMethod.Rd man/chromWithPAR.Rd man/countSingletons.Rd man/duplicateDiscordance.Rd man/getGenotype.Rd man/getVariableLengthData.Rd man/heterozygosity.Rd man/hwe.Rd man/imputedDosage.Rd man/inbreedCoeff.Rd man/isSNV.Rd man/isVariant.Rd man/meanBySample.Rd man/mendelErr.Rd man/missingGenotypeRate.Rd man/pca.Rd man/pedigree.Rd man/refFrac.Rd man/regression.Rd man/setVariantID.Rd man/titv.Rd man/variantInfo.Rd tests/test.R