chromWithPAR: Identify pseudoautosomal region
In smgogarten/SeqVarTools: Tools for variant data
chromWithPAR R Documentation
Identify pseudoautosomal region
Description
Flag single nucleotide variants
Usage
## S4 method for signature 'SeqVarGDSClass'
chromWithPAR(gdsobj, genome.build=c("hg19", "hg38"))
Arguments
gdsobj
A SeqVarGDSClass object with VCF data.
genome.build
A character sting indicating genome build.
Details
The pseudoautosomal region (PAR) should be treated like the autosomes for purposes of calculating allele frequency. This method returns a vector where sex chromosome variants are labeled wither "X", "Y", or "PAR".
Value
A character vector of chromosome, with values "PAR" for the pseudoautosomal region.
Author(s)
Stephanie Gogarten
References
smgogarten/SeqVarTools documentation built on July 4, 2023, 2:34 a.m.
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| chromWithPAR | R Documentation |
Identify pseudoautosomal region
Description
Flag single nucleotide variants
Usage
## S4 method for signature 'SeqVarGDSClass'
chromWithPAR(gdsobj, genome.build=c("hg19", "hg38"))
Arguments
gdsobj |
A |
genome.build |
A character sting indicating genome build. |
Details
The pseudoautosomal region (PAR) should be treated like the autosomes for purposes of calculating allele frequency. This method returns a vector where sex chromosome variants are labeled wither "X", "Y", or "PAR".
Value
A character vector of chromosome, with values "PAR" for the pseudoautosomal region.
Author(s)
Stephanie Gogarten
References
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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