pedigree: Pedigree for example data
In smgogarten/SeqVarTools: Tools for variant data
pedigree R Documentation
Pedigree for example data
Description
Pedigree for example data files in SeqArray.
Usage
pedigree
Format
A data.frame with the following columns.
familyFamily ID
individIndividual ID
fatherFather ID
motherMother ID
sexSex
sample.idsample.id in VCF/GDS files
Details
There is one trio in the pedigree.
Source
HapMap
Examples
data(pedigree)
head(pedigree)
gds <- seqOpen(seqExampleFileName("gds"))
setdiff(seqGetData(gds, "sample.id"), pedigree$sample.id)
seqClose(gds)
smgogarten/SeqVarTools documentation built on May 18, 2024, 1:22 a.m.
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| pedigree | R Documentation |
Pedigree for example data
Description
Pedigree for example data files in SeqArray.
Usage
pedigree
Format
A data.frame with the following columns.
familyFamily ID
individIndividual ID
fatherFather ID
motherMother ID
sexSex
sample.idsample.id in VCF/GDS files
Details
There is one trio in the pedigree.
Source
HapMap
Examples
data(pedigree)
head(pedigree)
gds <- seqOpen(seqExampleFileName("gds"))
setdiff(seqGetData(gds, "sample.id"), pedigree$sample.id)
seqClose(gds)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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