Man pages for smildiner/simHMM
Execute simulation study with mHMMbayes

average_model_SE	Compute the average model SE
average_model_SE_mcmc_se	Compute the MCMC SE for the average model SE
bias	Compute the parameter bias of a vector estimated parameters...
bias_MCMC_SE	MCMC Standard Error of the bias value
burn	Burn function for model output
coverage	Compute coverage
coverage_MCMC_SE	Coverage MCMC Standard Error
credible_interval	Compute upper and lower values of the 95% credible interval
empirical_MCMC_SE	Compute the MCMC SE
empirical_SE	Compute the empirical SE
fit_mHMM	Fit mHMM using mHMMfast
get_cci	Retrieve CCI estimates for parameters
get_pars	Load simulation parameters
get_pars_surf	Load simulation parameters
get_subject_tpm	Convert a list of probabilities into an m x m transition...
get_var_bar	Get between subject variance
init_log	Initialize simulation log
MAP	Retrieve MAP estimates for parameters
mHMMfast	Get estimations with mHMMfast
mHMMlight	Get estimations with mHMMlight
MSE	Mean Squared Error (MSE)
MSE_MCMC_SE	MSE MCMC Standard Error
postprocess_ci	Postprocess credible intervals
postprocess_gamma_int	Postprocess utility function for gamma_prob_bar
postprocess_param_est	Postprocessing utility function for parameter estimates
postprocess_subject_specific	Postprocess subject-specific metrics
rel_bias	Compute the parameter bias of a vector estimated parameters...
rel_bias_MCMC_SE	MCMC Standard Error of the bias value
run_one_sim	Run one simulation
run_one_sim_surf	Run one simulation in SurfSara Lisa
summarize_simulation_scenario	Wrapper function that computes all simulation metrics
summary.mHMM	Summary for mHMM
test_fit_mHMM	Fit mHMM using mHMMfast
test_get_pars_surf	Load simulation parameters
test_run_one_sim_surf	Run one simulation in SurfSara Lisa
vit_mHMM_map	Obtain hidden state sequence for each subject using the...