ConstructMetaspots: ConstructMetaspots
In smorabit/hdWGCNA: hdWGCNA

ConstructMetaspots

R Documentation

ConstructMetaspots

Description

Computes metaspots in a given Seurat object containing spatial transcriptomics data. This function is called by MetaspotsByGroups and should NOT be run directly!

Usage

ConstructMetaspots(
  cur_seurat,
  mode = "sum",
  assay = "Spatial",
  slot = "counts",
  layer = "counts"
)

Arguments

`cur_seurat`	A Seurat object
`mode`	"sum" or "average"
`assay`	Assay to extract data for aggregation. Default = 'Spatial'
`slot`	Slot to extract data for aggregation. Default = 'counts'
`layer`	Layer to extract data for aggregation. Default = 'counts'. Layer is used with Seurat v5 instead of slot.