ModuleRadarPlot: ModuleRadarPlot

In smorabit/hdWGCNA: hdWGCNA

ModuleRadarPlot

Description

Plots the expression level (module eigengene) of each co-expression module for different groups as a radar plot.

Usage

ModuleRadarPlot(
  seurat_obj,
  group.by = NULL,
  barcodes = NULL,
  combine = TRUE,
  ncol = 4,
  wgcna_name = NULL,
  fill = TRUE,
  draw.points = FALSE,
  ...
)

Arguments

seurat_obj	A Seurat object
group.by	the column name of the selected comparison in the DMEs dataframe
barcodes	A list of barcodes from colnames(seurat_obj) which will be used to subset the data before plotting.
combine	logical indicating whether or not to combine plots using patchwork
ncol	The number of columns for the combined plot if patchwork is being used
wgcna_name	The name of the hdWGCNA experiment in the seurat_obj@misc slot
...	additional parameters for ggradar

Details

ModuleRadarPlot visualizes the expression level (module eigengene, ME) of each co-expression module for different groups in a radial coordinate system. The ME for each module is averaged for each group, scaled, and then is plotted radially. The resulting plots help us to interpret which cell groups (clusters, cell types, etc) are expressing each module.

Value

ggplot object containing the ModuleRadarPlot

smorabit/hdWGCNA documentation built on Oct. 23, 2024, 11:19 p.m.