PlotModulePreservation: PlotModulePreservation

In smorabit/hdWGCNA: hdWGCNA

PlotModulePreservation

Description

Plotting function for Module Preservation statistics

Usage

PlotModulePreservation(
  seurat_obj,
  name,
  statistics = "summary",
  plot_labels = TRUE,
  label_size = 4,
  mod_point_size = 4,
  wgcna_name = NULL
)

Arguments

seurat_obj	A Seurat object
name	The name of the module preservation analysis to plot given in ModulePreservation
statistics	Which module preservation statistics to plot? Choices are summary, all, or a custom list
plot_labels	logical determining whether to plot the module labels
label_size	the size of the module labels
mod_point_size	the size of the points in each plot
wgcna_name	The name of the hdWGCNA experiment in the seurat_obj@misc slot

Details

This function creates a scatter plot showing the module preservation statistics for each module compared to the size of the module (number of genes).

smorabit/hdWGCNA documentation built on July 20, 2024, 8:58 p.m.