PlotModuleTraitCorrelation: PlotModuleTraitCorrelation
In smorabit/hdWGCNA: hdWGCNA

PlotModuleTraitCorrelation

R Documentation

PlotModuleTraitCorrelation

Description

Plotting function for Module Preservation statistics

Usage

PlotModuleTraitCorrelation(
  seurat_obj,
  high_color = "red",
  mid_color = "grey90",
  low_color = "blue",
  label = NULL,
  label_symbol = "stars",
  plot_max = NULL,
  text_size = 2,
  text_color = "black",
  text_digits = 3,
  combine = TRUE,
  wgcna_name = NULL
)

Arguments

`seurat_obj`	A Seurat object
`high_color`	color for positive correlation
`mid_color`	color for zero correlation
`low_color`	color for negative correlation
`label`	logical determining whether to add p-val label in each cell of the heatmap
`label_symbol`	show the labels as 'stars' or as 'numeric'
`plot_max`	maximum value of correlation to show on the colorbar
`text_size`	size of the labels
`text_color`	color of the text labels
`text_digits`	how many digits to show in the text labels
`combine`	logical determining whether to plot as one combined plot (TRUE) or to return individual plots as a list (FALSE)