stability.md

In smorabit/scicat:

title: "scicat tutorial" output: html_document: code_folding: hide

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scicat cluster stability analysis vignette

In this tutorial, we will analyze and validate cluster assignments in the 10X Genomics 3k PBMC dataset. We will be using Seurat for primary data processing, and scicat for cross validation of cluster assignments.

First, we are just going to follow the Seurat clustering tutorial. Download the PBMC dataset from 10X here.

'''{r} library(Seurat) library(dplyr)

install scicat from github:

library(devtools) devtools::install_github(repo='smorabit/scicat', force=T) library(scicat)

'''

smorabit/scicat documentation built on July 23, 2020, 3:57 a.m.