Description Usage Arguments Examples
after the Actual Impurity Reduction Importance is computed with a Random Forest, pvalues from different probes or SNPs belonging to the same gene can be aggregated in order to obtain a single pvalue for that gene. Correlation between probes can also be taken into account.
1 |
rf |
a ranger object with "importance="impurity_corrected" |
genenames |
a vector of the name of the gene to which each probe or SNP belongs, it has to be of size dim(x)[1] |
x |
design matrix used by the random forest |
method |
one of Tippett, Fisher, Kost, EBM |
adjust |
"no" / "yes" depending if correlation has to be taken into account |
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