mm14: Extract of marker mixture 14 LC/MS data

In sneumann/CAMERA: Collection of annotation related methods for mass spectrometry data

Extract of marker mixture 14 LC/MS data

Description

xcmsSet object containing quantitated LC/MS peaks from a marker mixture. The data is a centroided subset from 117-650 m/z and 271-302 seconds with 134 peaks. Positive ionization mode data in mzML file format.

Usage

data(mm14)

Format

The format is:

Formal class 'xcmsSet' [package "xcms"] with 8 slots
    @ peaks    : num [1:83, 1:11] 117 117 118 119 136
  .. ..- attr(*, "dimnames")=List of 2
  .. .. ..$ : NULL
  .. .. ..$ : chr [1:11] "mz" "mzmin" "mzmax" "rt"
  ..@ groups   : logi[0 , 0 ]
  ..@ groupidx : list()
  ..@ phenoData:'data.frame':	1 obs. of  1 variable:
  .. ..$ class: Factor w/ 1 level "mzML": 1
  ..@ rt       :List of 2
  .. ..$ raw      :List of 1
  .. .. ..$ : num [1:112] 270 271 271 271 272 ...
  .. ..$ corrected:List of 1
  .. .. ..$ : num [1:112] 270 271 271 271 272 ...
  ..@ filepaths: chr "mzML/MM14.mzML"
  ..@ profinfo :List of 2
  .. ..$ method: chr "bin"
  .. ..$ step  : num 0.1
  ..@ polarity : chr(0)
 

Details

The corresponding raw mzData files are located in the mzML subdirectory of this package.

Author(s)

Carsten Kuhl <[e-mail]>

Source

http://doi:10.1186/1471-2105-9-504

References

Data originally reported in "Highly sensitive feature detection for high resolution LC/MS" BMC Bioinformatics; 2008; 9:504.

sneumann/CAMERA documentation built on April 5, 2024, 2:33 a.m.