API for sneumann/CAMERA
Collection of annotation related methods for mass spectrometry data

Global functions
addFragments Source code
add_same_oidscore Source code
annotate Man page
annotate,xcmsSet-method Man page
annotateDiffreport Man page Source code
annotateDiffreport,xsAnnotate-methods Man page
annotateGrp Source code
annotateGrpMPI Source code
annotateGrpMPI2 Source code
calcCL Source code
calcCL3 Source code
calcCaS Man page
calcCaS,xsAnnotate-method Man page
calcCiS Man page
calcCiS,xsAnnotate-method Man page
calcIsotopeMatrix Source code
calcIsotopes Man page
calcIsotopes,xsAnnotate-method Man page
calcPC Man page
calcPC,calcPC-method Man page
calcPC,xsAnnotate-method Man page
calcPC.hcs Man page
calcPC.hcs,xsAnnotate-method Man page
calcPC.lpc Man page
calcPC.lpc,xsAnnotate-method Man page
calcRules Source code
checkHypothese Source code
checkIps Source code
checkIsotopes Source code
checkOidCausality Source code
checkQuasimolion Source code
class:ruleSet Man page
cleanParallel Man page Source code
combineHypothese Source code
combinexsAnnos Man page Source code
compoundLibraries Man page Source code
compoundQuantiles Man page Source code
compoundQuantiles-class Man page
create.matrix Source code
createHypothese Source code
example Source code
extractfragments Source code
fastMatch Source code
fast_corr Source code
findAdducts Man page
findAdducts,xsAnnotate-method Man page
findIsotopes Man page
findIsotopes,xsAnnotate-method Man page
findIsotopesForPS Source code
findIsotopesPspec Source code
findIsotopesWithValidation Man page
findIsotopesWithValidation,xsAnnotate-method Man page
findKendrickMasses Man page Source code
findNeutralLoss Man page Source code
findNeutralLossSpecs Man page Source code
fragments2metfrag Source code
fragments2metfusion Source code
generateRules Man page
generateRules,ruleSet-method Man page
getAllEICs Source code
getAllPeakEICs Man page
getAllPeakEICs,xsAnnotate-method Man page
getAtomCount Man page
getAtomCount,compoundQuantiles-method Man page
getEIC Source code
getEIC4Peaks Source code
getEICs Source code
getIsotopeCluster Man page Source code
getIsotopeProportion Man page
getIsotopeProportion,compoundQuantiles-method Man page
getMaxScans Source code
getPeaklist Man page
getPeaklist,xsAnnotate-method Man page
getPeaks Source code
getPeaksIdxCol Source code
getPeaks_selection Source code
getReducedPeaklist Man page
getReducedPeaklist,xsAnnotate-method Man page
getderivativeIons Source code Source code
getpspectra Man page Source code
groupCorr Man page
groupCorr,xsAnnotate-method Man page
groupDen Man page
groupDen,xsAnnotate-method Man page
groupFWHM Man page
groupFWHM,xsAnnotate-method Man page
is.wholenumber Source code
massDiffMatrix Source code
massDiffMatrixNL Source code
massWindowSizes Man page Source code
mm14 Man page
msgfun.snowParallel Source code
naOmit Source code
onLoad Source code
percentOutput Source code
plotEICs Man page
plotEICs,xsAnnotate-method Man page
plotEICs.xsAnnotate Man page
plotPsSpectrum Man page
plotPsSpectrum,xsAnnotate-method Man page
plotPsSpectrum.xsAnnotate Man page
psDist Man page
psDist,CAMERA-method Man page
psDist-methods Man page
pspec2metfrag Man page Source code
pspec2metfusion Man page Source code
readLists Man page
readLists,ruleSet-method Man page
resolveFragmentConnections Source code
ruleSet-class Man page
setCAMERAOptions Source code
setDefaultLists Man page
setDefaultLists,ruleSet-method Man page
setDefaultParams Man page
setDefaultParams,ruleSet-method Man page
setParams Man page
setParams,ruleSet,numeric,numeric,numeric,numeric,numeric,numeri Man page
show,ruleSet-method Man page
show,xsAnnotate-method Man page
xsAnnotate Man page Source code
xsAnnotate-class Man page
sneumann/CAMERA documentation built on Aug. 24, 2017, 6:38 a.m.