API for sneumann/CAMERA
Collection of annotation related methods for mass spectrometry data
| Global functions | |
|---|---|
| .onLoad | Source code |
| .setCAMERAOptions | Source code |
| addFragments | Source code |
| add_same_oidscore | Source code |
| annotate | Man page |
| annotate,xcmsSet-method | Man page |
| annotateDiffreport | Man page Source code |
| annotateDiffreport,xsAnnotate-methods | Man page |
| annotateGrp | Source code |
| annotateGrpMPI | Source code |
| annotateGrpMPI2 | Source code |
| calcCL | Source code |
| calcCL3 | Source code |
| calcCaS | Man page |
| calcCaS,xsAnnotate-method | Man page |
| calcCiS | Man page |
| calcCiS,xsAnnotate-method | Man page |
| calcIsotopeMatrix | Source code |
| calcIsotopes | Man page |
| calcIsotopes,xsAnnotate-method | Man page |
| calcPC | Man page |
| calcPC,calcPC-method | Man page |
| calcPC,xsAnnotate-method | Man page |
| calcPC.hcs | Man page |
| calcPC.hcs,xsAnnotate-method | Man page |
| calcPC.lpc | Man page |
| calcPC.lpc,xsAnnotate-method | Man page |
| checkHypothese | Source code |
| checkIps | Source code |
| checkIsotopes | Source code |
| checkOidCausality | Source code |
| checkQuasimolion | Source code |
| class:ruleSet | Man page |
| cleanParallel | Man page Source code |
| combineHypothese | Source code |
| combinexsAnnos | Man page Source code |
| compoundLibraries | Man page Source code |
| compoundQuantiles | Man page Source code |
| compoundQuantiles-class | Man page |
| create.matrix | Source code |
| createHypothese | Source code |
| example | Source code |
| extractfragments | Source code |
| fastMatch | Source code |
| fast_corr | Source code |
| findAdducts | Man page |
| findAdducts,xsAnnotate-method | Man page |
| findIsotopes | Man page |
| findIsotopes,xsAnnotate-method | Man page |
| findIsotopesForPS | Source code |
| findIsotopesPspec | Source code |
| findIsotopesWithValidation | Man page |
| findIsotopesWithValidation,xsAnnotate-method | Man page |
| findKendrickMasses | Man page Source code |
| findNeutralLoss | Man page Source code |
| findNeutralLossSpecs | Man page Source code |
| fragments2metfrag | Source code |
| fragments2metfusion | Source code |
| generateRules | Man page |
| generateRules,ruleSet-method | Man page |
| getAllEICs | Source code |
| getAllPeakEICs | Man page |
| getAllPeakEICs,xsAnnotate-method | Man page |
| getAtomCount | Man page |
| getAtomCount,compoundQuantiles-method | Man page |
| getEIC | Source code |
| getEIC4Peaks | Source code |
| getEICs | Source code |
| getIsotopeCluster | Man page Source code |
| getIsotopeProportion | Man page |
| getIsotopeProportion,compoundQuantiles-method | Man page |
| getMaxScans | Source code |
| getPeaklist | Man page |
| getPeaklist,xsAnnotate-method | Man page |
| getPeaks | Source code |
| getPeaksIdxCol | Source code |
| getPeaks_selection | Source code |
| getReducedPeaklist | Man page |
| getReducedPeaklist,xsAnnotate-method | Man page |
| getderivativeIons | Source code Source code |
| getpspectra | Man page Source code |
| groupCorr | Man page |
| groupCorr,xsAnnotate-method | Man page |
| groupDen | Man page |
| groupDen,xsAnnotate-method | Man page |
| groupFWHM | Man page |
| groupFWHM,xsAnnotate-method | Man page |
| is.wholenumber | Source code |
| massDiffMatrix | Source code |
| massDiffMatrixNL | Source code |
| massWindowSizes | Man page Source code |
| mm14 | Man page |
| msgfun.snowParallel | Source code |
| naOmit | Source code |
| percentOutput | Source code |
| plotEICs | Man page |
| plotEICs,xsAnnotate-method | Man page |
| plotEICs.xsAnnotate | Man page |
| plotPsSpectrum | Man page |
| plotPsSpectrum,xsAnnotate-method | Man page |
| plotPsSpectrum.xsAnnotate | Man page |
| psDist | Man page |
| psDist,CAMERA-method | Man page |
| psDist-methods | Man page |
| pspec2metfrag | Man page Source code |
| pspec2metfusion | Man page Source code |
| readLists | Man page |
| readLists,ruleSet-method | Man page |
| resolveFragmentConnections | Source code |
| ruleSet-class | Man page |
| setDefaultLists | Man page |
| setDefaultLists,ruleSet-method | Man page |
| setDefaultParams | Man page |
| setDefaultParams,ruleSet-method | Man page |
| setParams | Man page |
| setParams,ruleSet,numeric,numeric,numeric,numeric,numeric,numeri | Man page |
| show,ruleSet-method | Man page |
| show,xsAnnotate-method | Man page |
| xsAnnotate | Man page Source code |
| xsAnnotate-class | Man page |
