annotation.summary: annotation.summary()
In sneumann/RAMClustR: RAMClust: a novel feature clustering method enables spectral-matching based annotation for metabolomics data
Description
Usage
Arguments
Details
Value
Author(s)
References
View source: R/annotation.summary.R
Description
Write a .csv file containing a summary of the annotations in the ramclustR object.
Usage
1
annotation.summary(ramclustObj = RC, outfile = NULL)
Arguments
ramclustObj
R object - the ramclustR object which was used to write the .mat or .msp files
outfile
file path/name of output csv summary file. if NULL (default) will be exported to spectra/annotaionSummary.csv
Details
this function exports a csv file summarizing annotation evidence for each compound
Value
nothing
Author(s)
Corey Broeckling
References
Broeckling CD, Afsar FA, Neumann S, Ben-Hur A, Prenni JE. RAMClust: a novel feature clustering method enables spectral-matching-based annotation for metabolomics data. Anal Chem. 2014 Jul 15;86(14):6812-7. doi: 10.1021/ac501530d. Epub 2014 Jun 26. PubMed PMID: 24927477.
sneumann/RAMClustR documentation built on May 30, 2019, 5:05 a.m.
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Description Usage Arguments Details Value Author(s) References
View source: R/annotation.summary.R
Description
Write a .csv file containing a summary of the annotations in the ramclustR object.
Usage
1 | annotation.summary(ramclustObj = RC, outfile = NULL)
|
Arguments
ramclustObj |
R object - the ramclustR object which was used to write the .mat or .msp files |
outfile |
file path/name of output csv summary file. if NULL (default) will be exported to spectra/annotaionSummary.csv |
Details
this function exports a csv file summarizing annotation evidence for each compound
Value
nothing
Author(s)
Corey Broeckling
References
Broeckling CD, Afsar FA, Neumann S, Ben-Hur A, Prenni JE. RAMClust: a novel feature clustering method enables spectral-matching-based annotation for metabolomics data. Anal Chem. 2014 Jul 15;86(14):6812-7. doi: 10.1021/ac501530d. Epub 2014 Jun 26. PubMed PMID: 24927477.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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