ramclustR2: ramclustR2

Description Usage Arguments Details Value Author(s)

View source: R/ramclustR2.R

Description

Main clustering function

Usage

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ramclustR2(xcmsObj = NULL, ms = NULL, idmsms = NULL,
  taglocation = "filepaths", MStag = NULL, idMSMStag = NULL,
  featdelim = "_", timepos = 2, pkshape = FALSE, sr = NULL, ss = NULL,
  st = NULL, maxt = NULL, deepSplit = FALSE, blocksize = 2000,
  mult = 5, hmax = NULL, sampNameCol = NULL, collapse = TRUE,
  usePheno = TRUE, mspout = TRUE, mslev = 1, ExpDes = NULL,
  normalize = "TIC", minModuleSize = 2, linkage = "average", mzdec = 4,
  saveFF = TRUE, plots = TRUE, cor.use = "everything",
  method = "spearman", min.scans = NULL)

Arguments

ms

MS1 intensities =MSdata,

idmsms

=ms,

idMSMStag

character e.g. "02.cdf"

featdelim

character e.g. ="_"

timepos

numeric 2

sr

numeric also no clue yet = 5,

st

numeric no clue e.g. = 5,

maxt

numeric again no clue =20,

deepSplit

boolean e.g. =FALSE,

blocksize

integer number of features (scans?) processed in one block =1000,

mult

numeric =10

filename

character Filename of the nmrML to check

Details

This is the Details section

Value

A vector with the numeric values of the processed data

Author(s)

Corey Broeckling


sneumann/RAMClustR documentation built on May 30, 2019, 5:05 a.m.