ramclustR2: ramclustR2

In sneumann/RAMClustR: RAMClust: a novel feature clustering method enables spectral-matching based annotation for metabolomics data

Description

Main clustering function

Usage

ramclustR2(xcmsObj = NULL, ms = NULL, idmsms = NULL,
  taglocation = "filepaths", MStag = NULL, idMSMStag = NULL,
  featdelim = "_", timepos = 2, pkshape = FALSE, sr = NULL, ss = NULL,
  st = NULL, maxt = NULL, deepSplit = FALSE, blocksize = 2000,
  mult = 5, hmax = NULL, sampNameCol = NULL, collapse = TRUE,
  usePheno = TRUE, mspout = TRUE, mslev = 1, ExpDes = NULL,
  normalize = "TIC", minModuleSize = 2, linkage = "average", mzdec = 4,
  saveFF = TRUE, plots = TRUE, cor.use = "everything",
  method = "spearman", min.scans = NULL)

Arguments

ms	MS1 intensities =MSdata,
idmsms	=ms,
idMSMStag	character e.g. "02.cdf"
featdelim	character e.g. ="_"
timepos	numeric 2
sr	numeric also no clue yet = 5,
st	numeric no clue e.g. = 5,
maxt	numeric again no clue =20,
deepSplit	boolean e.g. =FALSE,
blocksize	integer number of features (scans?) processed in one block =1000,
mult	numeric =10
filename	character Filename of the nmrML to check

Details

This is the Details section

Value

A vector with the numeric values of the processed data

Author(s)

Corey Broeckling

sneumann/RAMClustR documentation built on May 30, 2019, 5:05 a.m.