msmsWorkspace-class: Workspace for 'msmsWorkflow' data
In sneumann/RMassBank: Workflow to process tandem MS files and build MassBank records
Description
Usage
Arguments
Details
Author(s)
See Also
Description
A workspace which stores input and output data for msmsWorkflow.
Usage
1
2
## S4 method for signature 'msmsWorkspace'
show(object)
Arguments
object
The msmsWorkspace to display.
Details
Slots:
- files
The input file names
- spectra
The spectra per compound (RmbSpectraSet) extracted from the raw files
- aggregated
A data.frame with an aggregated peak table from all spectra.
Further columns are added during processing.
- rc, rc.ms1
The recalibration curves generated in workflow step 4.
- parent
For the workflow steps after 4: the parent workspace containing the state (spectra, aggregate)
before recalibration, such that the workflow can be reprocessed from start.
- archivename
The base name of the files the archive is stored to during the workflow.
- settings
The RMassBank settings used during the workflow, if stored with the workspace.
#'
Methods:
- show
Shows a brief summary of the object and processing progress.
Author(s)
Michael Stravs, Eawag <michael.stravs@eawag.ch>
See Also
sneumann/RMassBank documentation built on Oct. 20, 2020, 3:19 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Author(s) See Also
Description
A workspace which stores input and output data for msmsWorkflow.
Usage
1 2 | ## S4 method for signature 'msmsWorkspace'
show(object)
|
Arguments
object |
The |
Details
Slots:
- files
The input file names
- spectra
The spectra per compound (
RmbSpectraSet) extracted from the raw files- aggregated
A data.frame with an aggregated peak table from all
spectra. Further columns are added during processing.- rc, rc.ms1
The recalibration curves generated in workflow step 4.
- parent
For the workflow steps after 4: the parent workspace containing the state (spectra, aggregate) before recalibration, such that the workflow can be reprocessed from start.
- archivename
The base name of the files the archive is stored to during the workflow.
- settings
The RMassBank settings used during the workflow, if stored with the workspace.
#'
Methods:
- show
Shows a brief summary of the object and processing progress.
Author(s)
Michael Stravs, Eawag <michael.stravs@eawag.ch>
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.