Files in snjy9182/smt-beta
Statistical analysis of single molecule trajectories

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/Dcoef.Helpers.R R/Dcoef.R R/DisplacementCDF.R R/Plotting.Helpers.R R/combineTrackll.R R/compareFolder.R R/compare_RT_CDF.R R/createTrackll.R R/dispVariance.R R/dwellTime.R R/exportTrackll.R R/filterTrack.R R/fitNormDistr.R R/fitResidenceTime.R R/helperFunctions.R R/linkSkippedFrames.R R/maskTracks.R R/mergeTracks.R R/msd.R R/plotIndividual_Tracks.R R/plotLocalizations_Density.R R/plotTrack.R R/plotTrackOverlay_Dcoef.R R/readDiaSessions.R R/readDiatrack.R R/readParticleTracker.R R/readSlimFast.R R/readUtrack.R R/sojourner.R R/sojournerGUI.R R/squareDisp.R R/tiff2pixmap.R R/zzz.R README.Rmd README.md

docs/COMOS-LICENSE.txt

docs/articles/index.html

docs/articles/sojourner-vignette.html

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-11-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-11-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-12-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-12-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-13-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-13-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-14-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-14-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-15-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-15-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-16-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-16-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-17-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-17-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-18-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-18-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-18-3.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-18-4.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-19-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-19-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-19-3.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-19-4.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-20-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-20-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-20-3.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-20-4.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-21-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-24-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-24-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-24-3.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-24-4.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-27-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-28-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-28-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-28-3.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-29-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-30-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-30-2.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-31-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-32-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-33-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-7-1.png

docs/articles/sojourner-vignette_files/figure-html/unnamed-chunk-9-1.png

docs/articles/sojourner_logo.png

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/20200509_185953.pdf docs/reference/20200509_185954.pdf docs/reference/20200509_185957.pdf docs/reference/20200509_190000.pdf docs/reference/20200509_190001.pdf

docs/reference/Dcoef-methods-1.png

docs/reference/Dcoef-methods-2.png

docs/reference/Dcoef-methods-3.png

docs/reference/Dcoef-methods-4.png

docs/reference/Dcoef-methods-5.png

docs/reference/Dcoef-methods-6.png

docs/reference/Dcoef-methods.html

docs/reference/HTZ1-20200509_190200.pdf docs/reference/NucTrackOverlay-20200509_190102.pdf docs/reference/NucTrackOverlay-20200509_190103.pdf docs/reference/NucTrackOverlay-20200509_190204.pdf docs/reference/NucTrackOverlay-20200509_190206.pdf docs/reference/SWR1-20200509_190200.pdf docs/reference/SWR1_2-20200509_190254.pdf docs/reference/SWR1_2-20200509_190255.pdf docs/reference/SWR1_WT_140mW_image6-20200509_190159.pdf

docs/reference/Track Coords-HTZ1-20200509_190200.csv

docs/reference/Track Coords-SWR1-20200509_190200.csv

docs/reference/Track Coords-SWR1_2-20200509_190254.csv

docs/reference/Track Coords-SWR1_2-20200509_190255.csv

docs/reference/Track Coords-SWR1_WT_140mW_image6-20200509_190200.csv

docs/reference/TrackMask-20200509_190058.pdf docs/reference/TrackMask-20200509_190105.pdf docs/reference/TrackMask-20200509_190207.pdf docs/reference/TrackOverlay-20200509_190056.pdf docs/reference/TrackOverlay-20200509_190057.pdf docs/reference/TrackOverlay-20200509_190201.pdf docs/reference/TrackOverlay-20200509_190202.pdf docs/reference/TrackOverlay-20200509_190254.pdf

docs/reference/bootstrap-methods-1.png

docs/reference/bootstrap-methods-2.png

docs/reference/bootstrap-methods.html

docs/reference/combineTrackll-methods.html

docs/reference/compareFolder-methods.html

docs/reference/compare_RT_CDF-methods-1.png

docs/reference/compare_RT_CDF-methods.html

docs/reference/createTrackll-methods.html

docs/reference/dispVariance-methods-1.png

docs/reference/dispVariance-methods-2.png

docs/reference/dispVariance-methods-3.png

docs/reference/dispVariance-methods.html

docs/reference/displacementCDF-methods-1.png

docs/reference/displacementCDF-methods.html

docs/reference/dwellTime-methods-1.png

docs/reference/dwellTime-methods.html

docs/reference/exportTrackll-methods.html

docs/reference/filterTrack-methods.html

docs/reference/fitCDF-methods-1.png

docs/reference/fitCDF-methods-2.png

docs/reference/fitCDF-methods-3.png

docs/reference/fitCDF-methods-4.png

docs/reference/fitCDF-methods-5.png

docs/reference/fitCDF-methods-6.png

docs/reference/fitCDF-methods.html

docs/reference/fitNormDistr-methods-1.png

docs/reference/fitNormDistr-methods-10.png

docs/reference/fitNormDistr-methods-11.png

docs/reference/fitNormDistr-methods-2.png

docs/reference/fitNormDistr-methods-3.png

docs/reference/fitNormDistr-methods-4.png

docs/reference/fitNormDistr-methods-5.png

docs/reference/fitNormDistr-methods-6.png

docs/reference/fitNormDistr-methods-7.png

docs/reference/fitNormDistr-methods-8.png

docs/reference/fitNormDistr-methods-9.png

docs/reference/fitNormDistr-methods.html

docs/reference/fitRT-methods-1.png

docs/reference/fitRT-methods.html

docs/reference/getCI-methods-1.png

docs/reference/getCI-methods-2.png

docs/reference/getCI-methods-3.png

docs/reference/getCI-methods-4.png

docs/reference/getCI-methods.html

docs/reference/hmmTrackll-methods.html

docs/reference/index.html

docs/reference/linkSkippedFrames-methods.html

docs/reference/mage6_20-05-09_18-59-48.csv

docs/reference/maskTracks-methods-1.png

docs/reference/maskTracks-methods-2.png

docs/reference/maskTracks-methods-3.png

docs/reference/maskTracks-methods-4.png

docs/reference/maskTracks-methods-5.png

docs/reference/maskTracks-methods-6.png

docs/reference/maskTracks-methods-7.png

docs/reference/maskTracks-methods-8.png

docs/reference/maskTracks-methods.html

docs/reference/mergeTracks-methods.html

docs/reference/msd-methods-1.png

docs/reference/msd-methods-2.png

docs/reference/msd-methods.html

docs/reference/plotIndividualTracks-methods.html

docs/reference/plotIndividualTraj-HSF-20200509_190112.pdf docs/reference/plotLocalization_Density_Heatmap--20200509_190124.pdf docs/reference/plotLocalization_Density_Heatmap--20200509_190146.pdf

docs/reference/plotLocalizations_Density-methods.html

docs/reference/plotTrack-methods-1.png

docs/reference/plotTrack-methods-10.png

docs/reference/plotTrack-methods-11.png

docs/reference/plotTrack-methods-12.png

docs/reference/plotTrack-methods-2.png

docs/reference/plotTrack-methods-3.png

docs/reference/plotTrack-methods-4.png

docs/reference/plotTrack-methods-5.png

docs/reference/plotTrack-methods-6.png

docs/reference/plotTrack-methods-7.png

docs/reference/plotTrack-methods-8.png

docs/reference/plotTrack-methods-9.png

docs/reference/plotTrack-methods.html

docs/reference/plotTrackOverlay_Dcoef-methods.html

docs/reference/plotTrackOverlay_Dcoef_Heatmap--20200509_190219.pdf docs/reference/plotTrackOverlay_Dcoef_Heatmap--20200509_190233.pdf

docs/reference/selComponentTracks-methods-1.png

docs/reference/selComponentTracks-methods-2.png

docs/reference/selComponentTracks-methods-3.png

docs/reference/selComponentTracks-methods-4.png

docs/reference/selComponentTracks-methods-5.png

docs/reference/selComponentTracks-methods.html

docs/reference/sojourner.html

docs/reference/sojournerGUI-methods.html

docs/reference/squareDisp-methods.html

inst/extdata/HSF/HSF-Halo_1.csv

inst/extdata/HSF/HSF-Halo_1_MASK.tif

inst/extdata/HSF/HSF-Halo_1_Nuclei.tif

inst/extdata/HSF/HSF-Halo_2.csv

inst/extdata/HSF/HSF-Halo_2_MASK.tif

inst/extdata/HSF/HSF-Halo_2_Nuclei.tif

inst/extdata/HSF_2/HSF-Halo_3.mat

inst/extdata/HSF_2/HSF-Halo_3_MASK.tif

inst/extdata/HSF_2/HSF-Halo_3_Nuclei.tif

inst/extdata/HTZ1/HTZ1_140mW_WT.csv

inst/extdata/INDEX/componentTrackID-SWR1.comp.1.csv

inst/extdata/INDEX/componentTrackID-SWR1.comp.2.csv

inst/extdata/INDEX/indexFile.csv

inst/extdata/INDEX/indexFile2.csv

inst/extdata/ImageJ/epl11AA_HTZ1Halo_No_RAP_fr10ms_120mW_1.tif.csv

inst/extdata/ImageJ/epl11AA_HTZ1Halo_No_RAP_fr10ms_120mW_1_MASK.tif

inst/extdata/ImageJ/epl11AA_HTZ1Halo_No_RAP_fr10ms_120mW_1_Nuclei.tif

inst/extdata/ImageJ/epl11AA_HTZ1Halo_No_RAP_fr10ms_120mW_2.tif.csv

inst/extdata/ImageJ/epl11AA_HTZ1Halo_No_RAP_fr10ms_120mW_2_MASK.tif

inst/extdata/ImageJ/epl11AA_HTZ1Halo_No_RAP_fr10ms_120mW_2_Nuclei.tif

inst/extdata/PREF/profile.csv

inst/extdata/SWR1/SWR1_WT_140mW_image6.csv

inst/extdata/SWR1/SWR1_WT_140mW_image6_MASK.tif

inst/extdata/SWR1/SWR1_WT_140mW_image6_Nuclei.tif

inst/extdata/SWR1_2/SWR1_WT_140mW_image6.csv

inst/extdata/SWR1_2/SWR1_WT_140mW_image6_MASK.tif

inst/extdata/SWR1_2/SWR1_WT_140mW_image6_Nuclei.tif

inst/extdata/SWR1_2/SWR1_WT_140mW_image7.csv

inst/extdata/SWR1_2/SWR1_WT_140mW_image7_MASK.tif

inst/extdata/SWR1_2/SWR1_WT_140mW_image7_Nuclei.tif

inst/myapp/helpers.R

inst/myapp/rsconnect/shinyapps.io/sunjay-yoo/shiny-smt-040.dcf

inst/myapp/server.R inst/myapp/ui.R

inst/myapp/www/ajax-loader-bar.gif

inst/script/sojourner-Data_Documentation.Rmd inst/unitTests/test_createTrackll.R inst/unitTests/test_filterTrack.R inst/unitTests/test_msd.R inst/unitTests/test_trimTrack.R man/Dcoef-methods.Rd man/combineTrackll-methods.Rd man/compareFolder-methods.Rd man/compare_RT_CDF-methods.Rd man/createTrackll-methods.Rd man/dispVariance-methods.Rd man/displacementCDF-methods.Rd man/dwellTime-methods.Rd man/exportTrackll-methods.Rd man/filterTrack-methods.Rd man/fitNormDistr-methods.Rd man/fitRT-methods.Rd man/linkSkippedFrames-methods.Rd man/maskTracks-methods.Rd man/mergeTracks-methods.Rd man/msd-methods.Rd man/plotIndividual_Tracks-methods.Rd man/plotLocalizations_Density-methods.Rd man/plotTrack-methods.Rd man/plotTrackOverlay_Dcoef-methods.Rd man/sojourner.Rd man/sojournerGUI-methods.Rd man/squareDisp-methods.Rd tests/runTests.R

vignettes/.gitignore

vignettes/sojourner-vignette.Rmd

vignettes/sojourner_logo.png

snjy9182/smt-beta documentation built on April 4, 2021, 6:26 a.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

snjy9182/smt-beta
Statistical analysis of single molecule trajectories

Files in snjy9182/smt-beta
Statistical analysis of single molecule trajectories

R Package Documentation

Browse R Packages

We want your feedback!

snjy9182/smt-beta Statistical analysis of single molecule trajectories

Files in snjy9182/smt-beta Statistical analysis of single molecule trajectories

R Package Documentation

Browse R Packages

We want your feedback!

snjy9182/smt-beta
Statistical analysis of single molecule trajectories

Files in snjy9182/smt-beta
Statistical analysis of single molecule trajectories