Files in snjy9182/smt-beta
Single Molecule Tracking

.Rbuildignore
.gitignore
CHANGELOG.md
DESCRIPTION
GUIDES/smt Pipeline.png
GUIDES/smt-Shiny-Interface-guide.Rmd GUIDES/trackll-Manipulation-Guide.Rmd GUIDES/trackll-Manipulation-Guide.pdf
NAMESPACE
R/Dcoef.Helpers.R R/Dcoef.R R/DisplacementCDF.R R/Plotting.Helpers.R R/bootstrap.R R/combineTrackll.R R/compare.RT.CDF.R R/compareFolder.R R/createTrackll.R R/densityMaskTracks.R R/dispVariance.R R/dwellTime.R R/exportTrackll.R R/filterTrack.R R/fitCDF.R R/fitNormDistr.R R/fitNormDistr.manual.R R/fitResidenceTime.R R/getCI.R R/helperFunctions.R R/hmmTrackll.R R/linkSkippedFrames.R R/maskTracks.R R/mergeTracks.R R/msd.R R/plotLocalizations.Density.R R/plotTrack.R R/plotTrackOverlay.Dcoef.R R/readDiaSessions.R R/readDiatrack.R R/readParticleTracker.R R/readSlimFast.R R/readUtrack.R R/selComponentTracks.R R/sojourner.R R/squareDisp.R
build/vignette.rds
inst/cpp/squareDispRcpp.cpp
inst/doc/smt-vignette.R inst/doc/smt-vignette.Rmd
inst/doc/smt-vignette.html
inst/doc/smt-vignette.pdf
inst/extdata/HSF/HSF-Halo_1.mat
inst/extdata/HSF/HSF-Halo_1_MASK.tif
inst/extdata/HSF/HSF-Halo_1_Nuclei.tif
inst/extdata/HSF/HSF-Halo_2.mat
inst/extdata/HSF/HSF-Halo_2_MASK.tif
inst/extdata/HSF/HSF-Halo_2_Nuclei.tif
inst/extdata/HSF_2/HSF-Halo_3.mat
inst/extdata/HSF_2/HSF-Halo_3_MASK.tif
inst/extdata/HSF_2/HSF-Halo_3_Nuclei.tif
inst/extdata/HTZ1/HTZ1_140mW_WT.txt
inst/extdata/INDEX/IndexFile.csv
inst/extdata/INDEX/componentTrackID-SWR1.comp.1.csv
inst/extdata/INDEX/componentTrackID-SWR1.comp.2.csv
inst/extdata/INDEX/indexFile2.csv
inst/extdata/ImageJ/epl11AA_HTZ1Halo_No_RAP_fr10ms_120mW_1.tif.csv
inst/extdata/ImageJ/epl11AA_HTZ1Halo_No_RAP_fr10ms_120mW_1_MASK.tif
inst/extdata/ImageJ/epl11AA_HTZ1Halo_No_RAP_fr10ms_120mW_1_Nuclei.tif
inst/extdata/ImageJ/epl11AA_HTZ1Halo_No_RAP_fr10ms_120mW_2.tif.csv
inst/extdata/ImageJ/epl11AA_HTZ1Halo_No_RAP_fr10ms_120mW_2_MASK.tif
inst/extdata/ImageJ/epl11AA_HTZ1Halo_No_RAP_fr10ms_120mW_2_Nuclei.tif
inst/extdata/PREF/profile.csv
inst/extdata/SWR1/SWR1_WT_140mW_image6.txt
inst/extdata/SWR1/SWR1_WT_140mW_image6_MASK.tif
inst/extdata/SWR1/SWR1_WT_140mW_image6_Nuclei.tif
inst/extdata/SWR1_2/SWR1_WT_140mW_image6.txt
inst/extdata/SWR1_2/SWR1_WT_140mW_image6_MASK.tif
inst/extdata/SWR1_2/SWR1_WT_140mW_image6_Nuclei.tif
inst/extdata/SWR1_2/SWR1_WT_140mW_image7.txt
inst/extdata/SWR1_2/SWR1_WT_140mW_image7_MASK.tif
inst/extdata/SWR1_2/SWR1_WT_140mW_image7_Nuclei.tif
inst/myapp/helpers.R
inst/myapp/rsconnect/shinyapps.io/sunjay-yoo/shiny-smt-040.dcf
inst/myapp/server.R inst/myapp/ui.R
inst/myapp/www/ajax-loader-bar.gif
man/Dcoef-methods.Rd man/bootstrap-methods.Rd man/combineTrackll-methods.Rd man/compare.RT.CDF-methods.Rd man/compareFolder-methods.Rd man/createTrackll-methods.Rd man/densityMaskTracks-methods.Rd man/dispVariance-methods.Rd man/displacementCDF-methods.Rd man/dwellTime-methods.Rd man/exportTrackll-methods.Rd man/filterTrack-methods.Rd man/fitCDF-methods.Rd man/fitNormDistr-methods.Rd man/fitNormDistr.manual-methods.Rd man/fitRT-methods.Rd man/getCI-methods.Rd man/hmmTrackll-methods.Rd man/linkSkippedFrames-methods.Rd man/maskTracks-methods.Rd man/mergeTracks-methods.Rd man/msd-methods.Rd man/plotLocalizations.Density-methods.Rd man/plotTrack-methods.Rd man/plotTrackOverlay.Dcoef-methods.Rd man/readDiaSessions-methods.Rd man/readDiatrack-methods.Rd man/readParticleTracker-methods.Rd man/readSlimFast-methods.Rd man/readUtrack-methods.Rd man/selComponentTracks-methods.Rd man/sojourner.Rd
sojourner.Rproj
vignettes/smt-vignette.Rmd
snjy9182/smt-beta documentation built on July 14, 2018, 4:42 a.m.