00_cubfits-package: Codon Bias Usage Fits
In snoweye/cubfits: Codon Usage Bias Fits

Description Details Author(s) References See Also Examples

Estimating mutation and selection coefficients on synonymous codon bias usage based on models of ribosome overhead cost (ROC). Multinomial logistic regression and Markov Chain Monte Carlo are used to estimate and predict protein production rates with/without the presence of expressions and measurement errors.

Package:	cubfits
Type:	Package
License:	Mozilla Public License 2.0
LazyLoad:	yes

The install command is simply as

> R CMD INSTALL cubfits_*.tar.gz

from a command mode or

R> install.packages("cubfits")

inside an R session.

Wei-Chen Chen wccsnow@gmail.com, Russell Zaretzki, William Howell, Drew Schmidt, and Michael Gilchrist.

https://github.com/snoweye/cubfits/

init.function(), cubfits(), cubpred(), and cubappr().

## Not run: 
suppressMessages(library(cubfits, quietly = TRUE))

demo(roc.train, 'cubfits', ask = F, echo = F)
demo(roc.pred, 'cubfits', ask = F, echo = F)
demo(roc.appr, 'cubfits', ask = F, echo = F)

## End(Not run)