API for snoweye/phyclust
Phylogenetic Clustering (Phyloclustering)

Global functions
.Color Man page
.EMC Man page
.EMControl Man page
.amino.acid Man page
.boundary.method Man page
.code.type Man page
.codon Man page
.edist.model Man page
.em.method Man page
.genetic.code Man page
.identifier Man page
.init.method Man page
.init.procedure Man page
.label.method Man page
.missing.code Man page
.nucleotide Man page
.se.model Man page
.show.option Man page
.snp Man page
.substitution.model Man page
.tzengEnv Man page
Class baseml Man page
Class ms Man page
Class phyclust Man page
Class phylo Man page
Class seq.data Man page
Class seqgen Man page
Data Crohn's Disease Man page
Data Pony 524 Man page
Data Pony 625 Man page
Data Toy Man page
EMControl Source code
Format fasta Man page
Format phylip Man page
I33Inv.fun Man page Source code
RRand Man page Source code
acode2aid Man page Source code
acode2aid.default Man page Source code
acode2aid.list Man page Source code
aid2acode Man page Source code
aid2acode.default Man page Source code
aid2acode.list Man page Source code
as.star.tree Man page Source code
bootstrap.merge.seq Man page Source code
bootstrap.seq Man page Source code
bootstrap.seq.data Man page Source code
bootstrap.seq.nucleotide Man page Source code
bootstrap.seq.snp Man page Source code
bootstrap.star.tree Man page Source code
bootstrap.star.trees Man page Source code
bootstrap.star.trees.seq Man page Source code
check.EMC Man page Source code
check.label Man page Source code
chkdim.Add.fun Man page Source code Source code
chkdim.Multiply.fun Man page Source code Source code
cid2aid Man page Source code
cid2aid.default Man page Source code
cid2aid.list Man page Source code
code2nid Man page Source code
code2nid.default Man page Source code
code2nid.list Man page Source code
code2snp Man page Source code
code2snp.default Man page Source code
code2snp.list Man page Source code
construct.bigB.dPI Man page Source code
construct.dB.list.fun Man page Source code
convert.QA.to.vect Man page Source code
final.BigMatB.fun Man page Source code
final.BigMatB.matC.fun Man page Source code
find.best Man page Source code
find.consensus Man page Source code
gen.equal.star.anc.dec Man page Source code
gen.seq.HKY Man page Source code
gen.seq.SNP Man page Source code
gen.star.tree Man page Source code
gen.unit.K Man page Source code
get.BB.fun Man page Source code
get.I.fun Man page Source code
get.allpossROUTE.fun Man page Source code Source code
get.deriBigMatB.fun Man page Source code
get.fullBB.fun Man page Source code
get.ini.possHap.hapReserv.fun Man page Source code
get.medBB.skip.fun Man page Source code
get.preBB.skip.fun Man page Source code
get.rooted.tree.height Man page Source code
get.step.mut.fun Man page Source code
get.subPI.fun Man page Source code
getBigMatB.fun Man page Source code
getI13.fun Man page Source code
getPIstar.fun Man page Source code
getcut.fun Man page Source code
haplo.phase.known Man page Source code
haplo.post.prob Man page Source code
index.k.fun Man page Source code
ms Man page Source code
my.cat Man page Source code
my.format Man page Source code
my.print Man page Source code
nid2aid Man page Source code
nid2aid.default Man page Source code
nid2aid.list Man page Source code
nid2cid Man page Source code
nid2cid.default Man page Source code
nid2cid.list Man page Source code
nid2code Man page Source code
nid2code.default Man page Source code
nid2code.list Man page Source code
nid2sid Man page Source code
onLoad Source code
onUnload Source code
paml.baseml Man page Source code
paml.baseml.control Man page Source code
paml.baseml.show.default Man page Source code
phyclust Man page Source code
phyclust-package Man page
phyclust.Pt Man page Source code
phyclust.e.step Man page Source code
phyclust.edist Man page Source code
phyclust.em.step Man page Source code
phyclust.logL Man page Source code
phyclust.m.step Man page Source code
phyclust.se Man page Source code
phyclust.se.update Man page Source code
phyclust.update Man page Source code
plotdots Man page Source code
plotfd Man page Source code
plotgaps Man page Source code
plothist Man page Source code
plothist.my Man page Source code
plotnj Man page Source code
plotstruct Man page Source code
print.Pt Man page Source code
print.RRand Man page Source code
print.baseml Man page Source code
print.ms Man page Source code
print.phyclust Man page Source code
print.seq.data Man page Source code
print.seqgen Man page Source code
prune.Mu Man page Source code
read.fasta Man page Source code
read.fasta.format Man page Source code
read.phylip Man page Source code
read.phylip.format Man page Source code
read.seqgen Man page Source code
rescale.rooted.tree Man page Source code
seq.data.gap Man page
seq.data.toy Man page
seqgen Man page Source code
show.option Source code
sid2nid Man page Source code
sid2snp Man page Source code
sid2snp.default Man page Source code
sid2snp.list Man page Source code
snp2code Man page Source code
snp2code.default Man page Source code
snp2code.list Man page Source code
snp2sid Man page Source code
snp2sid.default Man page Source code
snp2sid.list Man page Source code
summary.phyclust Man page Source code
translate.EMC Man page Source code
translate.EMC.se Man page Source code
translate.ret Man page Source code
translate.ret.se Man page Source code
unstrsplit Man page Source code
write.fasta Man page Source code
write.fasta.format Man page Source code
write.paml Man page Source code
write.paml.format Man page Source code
write.phylip Man page Source code
write.phylip.format Man page Source code
zero.mat.fun Man page Source code
snoweye/phyclust documentation built on Nov. 19, 2017, 4:44 a.m.