Man pages for soderling-lab/geneLists
tools for mapping gene identifiers and a collection of gene lists in a universal format

alsgeneALS
alsodgeneALS
alzgeneALZ
arrabroadwave3ASDarrabroadwave3ASD
biesemann2014sortedsynaptosomesAll Synaptosome|All FASS|FASS Enriched (>2)
boyken2013presynapseDocked SV|VGLUT SV|VGAT SV
chen2014AMPARsAMPAR Proteome
cheng2006PSDcell adhesion|chaperones|cytoskeleton - actin|cytoskeleton -...
ciPSDHeller2012|Kang2014|Loh2016|Nakamura2016|Uezu2016|ciPSD
collins2005phosphoPredicted Akt Kinase substrates|Predicted ATM Kinase...
collins2006PSD14-3-3|14-3-4|14-3-5|14-3-6|14-3-7|14-3-8|14-3-9|Actin /...
corum(ER)-localized multiprotein complex, Ig heavy chains...
deligt2012IDdeligt2012ID
derubeis2014ASDASD
disgeneDBDautism|intellectual disability|attention deficit...
disgeneLSDlysosomal storage diseases
disgeneNDDalzheimer|multiple sclerosis|amyotrophic lateral...
documentDatasetdocumentDataset
dosemeci2007PSD95proteomeAffinity Purified PSD95-Complex
e3ligaseHECT|HECT_2|HECTc|PELI|RING|SPRY|UBOX|UBR|zf-C2H2
ePSDePSD
fromer2014dbdASD:arrabroadwave3ASD|ID:deligt2012ID|SZ:girard2011SZ|SZ:gulsuner2013SZ|ASD:iossifov2012ASD|ASD:neale2012ASD|ASD:oroak2012ASD|ID:rauch2012ID|ASD:sanders2012ASD|SZ:xu2012SZ
fromer2014schzSCHZ
g2pDBDautism|intellectual disability|epilepsy
geisingerDBDID/DD|Autism|Epilepsy|ADHD|Schizophrenia|Bipolar Disorder
geneListsgeneLists
getHomologsgetHomologs
getIDsgetIDs
girard2011SZgirard2011SZ
gulsuner2013SZgulsuner2013SZ
han2013shank3proteomeY2H|IP
hlgdLGD
hsKinomeAGC|Atypical|CAMK|CK1|CMGC|Other|RGC|STE|TK|TKL
hyperTesthyperTest
iossifov2012ASDiossifov2012ASD
iossifov2014ASDASD
iPSDArhgef9|Gphn|InSyn1|iPSD
itzhak2016Actin binding...
itzhak2016markersActin binding...
itzhak2016predictionsActin binding...
itzhak2017Actin binding...
itzhak2017markersActin binding...
itzhak2017predictionsActin binding...
jordan2004psdCell...
lee2017shank3proteomemPFC|HP+STR|Y2H
lee2017shank3zincZn-Induced Interactome
lelieveld2016IDID Diagnostic Genes|DNM Enriched|Combined
lopitDCmarkersCYTOSOL|ER|GA|LYSOSOME|MITOCHONDRION|NUCLEUS/CHROMATIN|PEROXISOME|PM|PROTEASOME|RIBOSOME|unknown
lopitDCpredictionsCYTOSOL|ER|GA|LYSOSOME|MITOCHONDRION|NUCLEUS/CHROMATIN|PEROXISOME|PM|PROTEASOME|RIBOSOME|unknown
mapIDsmapIDs
mappingDBsmappingDBs()
mitocarta2mitocarta2
msgeneMS
msKinomeAGC|Atypical|CAMK|CK1|CMGC|Other|RGC|STE|TK|TKL
neale2012ASDneale2012ASD
oroak2012ASDoroak2012ASD
orre2019A431Cytosol|Mitochondria|Nuclear|Secretory|Unclassified
orre2019concensusCytosol|Mitochondria|Nuclear|Secretory|Unclassified
orre2019H322Cytosol|Mitochondria|Nuclear|Secretory|Unclassified
orre2019HCC827Cytosol|Mitochondria|Nuclear|Secretory|Unclassified
orre2019MCF7Cytosol|Mitochondria|Nuclear|Secretory|Unclassified
orre2019U251Cytosol|Mitochondria|Nuclear|Secretory|Unclassified
pdgenePD
peng2004psdcell adhesion|chaperone|cytoskeleton - actin|GTPases and...
phillips2004psdAll
queryMGIqueryMGI
rauch2012IDrauch2012ID
read_gmtread_gmt - read gmt file into R
ripke2014SCHZshort_name
sanders2012ASDsanders2012ASD
sanders2015ASDASD
satterstrom2020ASDASD
sfariAnimalASD
sfariGeneASD
sharma2015brainBrain|Brainstem|Cerebellum|Corpus Callosum|Hippocampus|Motor...
spence2019wrp_P5-interactome
synsysnetpost:CELL ADH TRANS SIGN|post:CELL...
takamori2006SVCell surface|Chaperones|Cytoskeleton|Endocytosis- related...
takano2020takano2020
trinidad2005phosphoPSDAdhesion and Membrane|Association and...
trinidad2006phosphoPSDAdaptor/Sorting|DNA/nucleus/histone|Enzyme/G protein|Folding/...
uniprotSubcellUniprot: [64-kDa C-terminal product]: Cytoplasm,...
urmcDBDautism|intellectual disability|epilepsy
velmeshev2019ASDAST-FB DEGs|AST-PP DEGs|Endothelial DEGs|IN-PV DEGs|IN-SST...
velmeshev2019cellsAST-FB|AST-PP|Endothelial|IN-PV|IN-SST|IN-SV2C|IN-VIP|L2/3|L4|L5/6|L5/6-CC|Microglia|Neu-mat|Neu-NRGN-I|Neu-NRGN-II|Oligodendrocytes|OPC
wang2017EpilepsyEpilepsy|Neurodevelopment|Epilepsy-Related|Potential|All
weingarten2014AZweingarten2014AZ
wilkinson2017gapgefSyngap1|Agap2|Kalrn
write_gmtwrite_gmt
xu2012SZxu2012SZ
soderling-lab/geneLists documentation built on Sept. 6, 2021, 8:22 p.m.