Man pages for soderling-lab/geneLists
tools for mapping gene identifiers and a collection of gene lists in a universal format
| alsgene | ALS |
| alsodgene | ALS |
| alzgene | ALZ |
| arrabroadwave3ASD | arrabroadwave3ASD |
| biesemann2014sortedsynaptosomes | All Synaptosome|All FASS|FASS Enriched (>2) |
| boyken2013presynapse | Docked SV|VGLUT SV|VGAT SV |
| chen2014AMPARs | AMPAR Proteome |
| cheng2006PSD | cell adhesion|chaperones|cytoskeleton - actin|cytoskeleton -... |
| ciPSD | Heller2012|Kang2014|Loh2016|Nakamura2016|Uezu2016|ciPSD |
| collins2005phospho | Predicted Akt Kinase substrates|Predicted ATM Kinase... |
| collins2006PSD | 14-3-3|14-3-4|14-3-5|14-3-6|14-3-7|14-3-8|14-3-9|Actin /... |
| corum | (ER)-localized multiprotein complex, Ig heavy chains... |
| deligt2012ID | deligt2012ID |
| derubeis2014ASD | ASD |
| disgeneDBD | autism|intellectual disability|attention deficit... |
| disgeneLSD | lysosomal storage diseases |
| disgeneNDD | alzheimer|multiple sclerosis|amyotrophic lateral... |
| documentDataset | documentDataset |
| dosemeci2007PSD95proteome | Affinity Purified PSD95-Complex |
| e3ligase | HECT|HECT_2|HECTc|PELI|RING|SPRY|UBOX|UBR|zf-C2H2 |
| ePSD | ePSD |
| fromer2014dbd | ASD:arrabroadwave3ASD|ID:deligt2012ID|SZ:girard2011SZ|SZ:gulsuner2013SZ|ASD:iossifov2012ASD|ASD:neale2012ASD|ASD:oroak2012ASD|ID:rauch2012ID|ASD:sanders2012ASD|SZ:xu2012SZ |
| fromer2014schz | SCHZ |
| g2pDBD | autism|intellectual disability|epilepsy |
| geisingerDBD | ID/DD|Autism|Epilepsy|ADHD|Schizophrenia|Bipolar Disorder |
| geneLists | geneLists |
| getHomologs | getHomologs |
| getIDs | getIDs |
| girard2011SZ | girard2011SZ |
| gulsuner2013SZ | gulsuner2013SZ |
| han2013shank3proteome | Y2H|IP |
| hlgd | LGD |
| hsKinome | AGC|Atypical|CAMK|CK1|CMGC|Other|RGC|STE|TK|TKL |
| hyperTest | hyperTest |
| iossifov2012ASD | iossifov2012ASD |
| iossifov2014ASD | ASD |
| iPSD | Arhgef9|Gphn|InSyn1|iPSD |
| itzhak2016 | Actin binding... |
| itzhak2016markers | Actin binding... |
| itzhak2016predictions | Actin binding... |
| itzhak2017 | Actin binding... |
| itzhak2017markers | Actin binding... |
| itzhak2017predictions | Actin binding... |
| jordan2004psd | Cell... |
| lee2017shank3proteome | mPFC|HP+STR|Y2H |
| lee2017shank3zinc | Zn-Induced Interactome |
| lelieveld2016ID | ID Diagnostic Genes|DNM Enriched|Combined |
| lopitDCmarkers | CYTOSOL|ER|GA|LYSOSOME|MITOCHONDRION|NUCLEUS/CHROMATIN|PEROXISOME|PM|PROTEASOME|RIBOSOME|unknown |
| lopitDCpredictions | CYTOSOL|ER|GA|LYSOSOME|MITOCHONDRION|NUCLEUS/CHROMATIN|PEROXISOME|PM|PROTEASOME|RIBOSOME|unknown |
| mapIDs | mapIDs |
| mappingDBs | mappingDBs() |
| mitocarta2 | mitocarta2 |
| msgene | MS |
| msKinome | AGC|Atypical|CAMK|CK1|CMGC|Other|RGC|STE|TK|TKL |
| neale2012ASD | neale2012ASD |
| oroak2012ASD | oroak2012ASD |
| orre2019A431 | Cytosol|Mitochondria|Nuclear|Secretory|Unclassified |
| orre2019concensus | Cytosol|Mitochondria|Nuclear|Secretory|Unclassified |
| orre2019H322 | Cytosol|Mitochondria|Nuclear|Secretory|Unclassified |
| orre2019HCC827 | Cytosol|Mitochondria|Nuclear|Secretory|Unclassified |
| orre2019MCF7 | Cytosol|Mitochondria|Nuclear|Secretory|Unclassified |
| orre2019U251 | Cytosol|Mitochondria|Nuclear|Secretory|Unclassified |
| pdgene | PD |
| peng2004psd | cell adhesion|chaperone|cytoskeleton - actin|GTPases and... |
| phillips2004psd | All |
| queryMGI | queryMGI |
| rauch2012ID | rauch2012ID |
| read_gmt | read_gmt - read gmt file into R |
| ripke2014SCHZ | short_name |
| sanders2012ASD | sanders2012ASD |
| sanders2015ASD | ASD |
| satterstrom2020ASD | ASD |
| sfariAnimal | ASD |
| sfariGene | ASD |
| sharma2015brain | Brain|Brainstem|Cerebellum|Corpus Callosum|Hippocampus|Motor... |
| spence2019 | wrp_P5-interactome |
| synsysnet | post:CELL ADH TRANS SIGN|post:CELL... |
| takamori2006SV | Cell surface|Chaperones|Cytoskeleton|Endocytosis- related... |
| takano2020 | takano2020 |
| trinidad2005phosphoPSD | Adhesion and Membrane|Association and... |
| trinidad2006phosphoPSD | Adaptor/Sorting|DNA/nucleus/histone|Enzyme/G protein|Folding/... |
| uniprotSubcell | Uniprot: [64-kDa C-terminal product]: Cytoplasm,... |
| urmcDBD | autism|intellectual disability|epilepsy |
| velmeshev2019ASD | AST-FB DEGs|AST-PP DEGs|Endothelial DEGs|IN-PV DEGs|IN-SST... |
| velmeshev2019cells | AST-FB|AST-PP|Endothelial|IN-PV|IN-SST|IN-SV2C|IN-VIP|L2/3|L4|L5/6|L5/6-CC|Microglia|Neu-mat|Neu-NRGN-I|Neu-NRGN-II|Oligodendrocytes|OPC |
| wang2017Epilepsy | Epilepsy|Neurodevelopment|Epilepsy-Related|Potential|All |
| weingarten2014AZ | weingarten2014AZ |
| wilkinson2017gapgef | Syngap1|Agap2|Kalrn |
| write_gmt | write_gmt |
| xu2012SZ | xu2012SZ |
