getIDs: getIDs

In soderling-lab/geneLists: tools for mapping gene identifiers and a collection of gene lists in a universal format

Description

Mapping gene identifiers. An easy-to-use and robust wrapper around AnnotationDbi's mapIds function.

Usage

getIDs(
  identifiers,
  from,
  to,
  species = NULL,
  taxid = NULL,
  quiet = TRUE,
  multiVals = "first",
  ...
)

Arguments

identifiers	- input gene identifiers
from	- input identifier type, one of (case insensitive): 'c("ACCNUM", "ALIAS", "ENSEMBL", "ENSEMBLPROT", "ENSEMBLTRANS", "ENTREZID", "ENZYME", "EVIDENCE", "EVIDENCEALL", "GENENAME", "GO", "GOALL", "IPI", "MGI", "ONTOLOGY", "ONTOLOGYALL", "PATH", "PFAM", "PMID", "PROSITE", "REFSEQ", "SYMBOL", "UNIGENE", "UNIPROT")'
to	- output identifier type, see 'from'.
species	- organism identifier for input genes.

Value

output gene identifiers

Author(s)

Tyler W Bradshaw, [e-mail]

References

none

Examples

getIDs(mygenes, from = "symbol", to = "entrez", species = "mouse")

soderling-lab/geneLists documentation built on Sept. 6, 2021, 8:22 p.m.