| checkMatch | Check how oligos and assays match to their target sequences |
| consensusProfile | Get sequence information from an alignment |
| designAssays | Design (RT)-PCR assays |
| designOligos | Design primers and probes |
| example-datasets | Example datasets |
| plotData | Plot an Rprimer object |
| Rprimer-classes | S4 classes for representation of different Rprimer objects |
| rprimer-package | rprimer: Design Degenerate Oligos from a Multiple DNA... |
| runRprimerApp | rprimer Shiny application |
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