Files in sofpn/rprimer

Design Degenerate Oligos from a Multiple DNA Sequence Alignment

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/AllClasses.R R/checkMatch.R R/consensusProfile.R R/datasets.R R/designAssays.R R/designOligos.R R/plotData.R R/rprimer-package.R R/runRprimerApp.R R/shiny-app.R R/shiny-helpers.R R/shiny-module-assay.R R/shiny-module-assay_filter.R R/shiny-module-consensus.R R/shiny-module-data.R R/shiny-module-oligo.R R/shiny-module-oligo_filter.R R/shiny-module-welcome.R

R/sysdata.rda

R/tm.R README.Rmd README.md

codecov.yml

data-raw/code-to-generate-example-data.R data-raw/lookup-tables.R

data/exampleRprimerAlignment.RData

data/exampleRprimerAssay.RData

data/exampleRprimerMatchAssay.RData

data/exampleRprimerMatchOligo.RData

data/exampleRprimerOligo.RData

data/exampleRprimerProfile.RData

inst/CITATION

inst/extdata/example_alignment.txt

inst/script/accession_valid_sequences.txt

inst/script/documentation_example_alignment.txt

inst/script/script_to_identify_valid_genomes.R

inst/script/typing_results.txt

man/Rprimer-classes.Rd man/checkMatch.Rd man/consensusProfile.Rd man/designAssays.Rd man/designOligos.Rd man/example-datasets.Rd

man/figures/README-unnamed-chunk-10-1.png

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man/figures/README-unnamed-chunk-8-1.png

man/figures/README-unnamed-chunk-9-1.png

man/figures/rprimer.png

man/plotData.Rd man/rprimer-package.Rd man/runRprimerApp.Rd tests/testthat.R tests/testthat/test-AllClasses.R tests/testthat/test-checkMatch.R tests/testthat/test-consensusProfile.R tests/testthat/test-designAssays.R tests/testthat/test-designOligos.R tests/testthat/test-plotData.R tests/testthat/test-tm.R tests/testthat/test-workflow.R

vignettes/bibliography.bibtex

vignettes/biomed-central.csl

vignettes/getting-started-with-rprimer.Rmd

sofpn/rprimer documentation built on July 2, 2023, 7:15 a.m.