fn.set.regional.species.pool: Initialize species pool for fn.metaSIM

In sokole/MCSim: Metacommunity simulations for ecologists

Initialize species pool for fn.metaSIM

Description

Initialize species pool for fn.metaSIM

Usage

fn.set.regional.species.pool(alpha.fisher = 1)
fn.set.regional.species.pool(gamma.abund = c(.9, .4, .2, .3))

Arguments

alpha.fisher	Fisher's alpha used to initiate the simulation.
n.timestep	Number of generations (time steps) in the simulation, can affect number of novel species. Default is 0.
nu	Scalar value representing the probability that a novel species is recruited. Hubbell's “speciation rate”.
speciation.limit	A limit to the number of novel species that can occur in the simulation, default is 0.
JM	Total number of individuals in the metacommunity.
gamma.abund	Vector of relative abundances or counts used to set regional species pool RAs
trait.dispersal	Vector of trait scores for dispersal, should be in range 0 to 1, or NULL
trait.dispersal.median	Median value for species' dispersal trait values.
trait.dispersal.range	Range in variation allowed for species' trait dispersal values.
Ef.min	Min limit for environmental gradient
Ef.max	Max limit for environmental gradient
trait.Ef	Vector or value of niche positions for species in regional pool
trait.Ef.sd	Vector or value of niche breadths
taxa.list.prefix	Text appended as prefix to species names to prevent errors for column names when site by species matrices are created. Default is "spp".

Details

Internal function called by fn.metaSIM.

sokole/MCSim documentation built on April 2, 2022, 5:43 a.m.