Files in sokole/MCSim
Metacommunity simulations for ecologists
.Rbuildignore
.gitignore
DESCRIPTION
MCSim_0.4.9.tar.gz
MCSim_0.4.9.zip
NAMESPACE
R/fn.lambda.R
R/fn.lottery.recruit.R
R/fn.recruit.Jt.R
R/fn.set.regional.species.pool.R
R/functions_untb.R
R/make.landscape.R
R/metasim.R
R/metasim.disturbance.R
R/package-MCSim.R
R/plot.coenoclines.r
R/plot.dot.plots.R
R/plot.standardized.disp.kernel.R
R/utils-pipe.R
README.md
R_script_in_development/01_River_Metacomms_Example.R
R_script_in_development/02_sim_example_with_disturbance.R
R_script_in_development/SIM_METACOMM_nicheScaling-1_m-0.001_nu-0.001_w-1e+05_rep-168_2019-08-29_181004_20190829_181231.rda
R_script_in_development/TESTS/01_simple_sim_tests.r
R_script_in_development/TESTS/02_disturbance_frequency_with_MCSim.r
R_script_in_development/example_metaSIM_disturbance.r
R_script_in_development/example_metaSIM_refugia_and_disturbance.r
R_script_in_development/example_sim.r
R_script_in_development/example_sim_test_updated_fx_names.r
R_script_in_development/fn.metaSIM.disturbance.R
R_script_in_development/my_disturbance_sim_output_directory/sim.metadata_niche_shift_20211016_212427.csv
R_script_in_development/my_disturbance_sim_output_directory/sim.metadata_niche_shift_20211017_103108.csv
R_script_in_development/working_with_in_dev_plotting_fxns.r
R_script_in_development/years1419.csv
data/data_family.rda
data/data_sim_parameters.rda
man/MCSim.Rd
man/as.count.Rd
man/fisher.ecosystem.Rd
man/fn.lambda.Rd
man/fn.lottery.recruit.Rd
man/fn.metaSIM.Rd
man/fn.recruit.Jt.Rd
man/fn.set.regional.species.pool.Rd
man/make.landscape.Rd
man/metasim.Rd
man/metasim.disturbance.Rd
man/pipe.Rd
man/plot.coenoclines.Rd
man/plot.dot.plots.Rd
man/plot.standardized.disp.kernel.Rd
vignettes/.gitignore
vignettes/MCSim-intro.Rmd
vignettes/MCSim-intro_cache/html/__packages
vignettes/MCSim-intro_cache/html/unnamed-chunk-12_6c2efe9596151f2632df91118e1124ec.RData
vignettes/MCSim-intro_cache/html/unnamed-chunk-12_6c2efe9596151f2632df91118e1124ec.rdb
vignettes/MCSim-intro_cache/html/unnamed-chunk-12_6c2efe9596151f2632df91118e1124ec.rdx
vignettes/MCSim-intro_cache/html/unnamed-chunk-13_834e63fec7c0b654e21621600cb10cfd.RData
vignettes/MCSim-intro_cache/html/unnamed-chunk-13_834e63fec7c0b654e21621600cb10cfd.rdb
vignettes/MCSim-intro_cache/html/unnamed-chunk-13_834e63fec7c0b654e21621600cb10cfd.rdx
vignettes/MCSim-intro_cache/html/unnamed-chunk-14_72a7befbd96a0be40e4bf0560218d4a8.RData
vignettes/MCSim-intro_cache/html/unnamed-chunk-14_72a7befbd96a0be40e4bf0560218d4a8.rdb
vignettes/MCSim-intro_cache/html/unnamed-chunk-14_72a7befbd96a0be40e4bf0560218d4a8.rdx
vignettes/MCSim-intro_cache/html/unnamed-chunk-15_3d4db265135edcf84125cbf1db123e23.RData
vignettes/MCSim-intro_cache/html/unnamed-chunk-15_3d4db265135edcf84125cbf1db123e23.rdb
vignettes/MCSim-intro_cache/html/unnamed-chunk-15_3d4db265135edcf84125cbf1db123e23.rdx
vignettes/MCSim-intro_cache/html/unnamed-chunk-3_dc1f93514bd902a1028ccfe736230dd1.RData
vignettes/MCSim-intro_cache/html/unnamed-chunk-3_dc1f93514bd902a1028ccfe736230dd1.rdb
vignettes/MCSim-intro_cache/html/unnamed-chunk-3_dc1f93514bd902a1028ccfe736230dd1.rdx
vignettes/MCSim-intro_cache/html/unnamed-chunk-5_2ec1c0aee0a5c146d9dd59393f4c8df2.RData
vignettes/MCSim-intro_cache/html/unnamed-chunk-5_2ec1c0aee0a5c146d9dd59393f4c8df2.rdb
vignettes/MCSim-intro_cache/html/unnamed-chunk-5_2ec1c0aee0a5c146d9dd59393f4c8df2.rdx
vignettes/MCSim-intro_cache/html/unnamed-chunk-7_50509b5b9ce762e5e6296e3ffc400ba6.RData
vignettes/MCSim-intro_cache/html/unnamed-chunk-7_50509b5b9ce762e5e6296e3ffc400ba6.rdb
vignettes/MCSim-intro_cache/html/unnamed-chunk-7_50509b5b9ce762e5e6296e3ffc400ba6.rdx
vignettes/MCSim-intro_cache/html/unnamed-chunk-9_390053712f87c05e9c6a9b09489f1066.RData
vignettes/MCSim-intro_cache/html/unnamed-chunk-9_390053712f87c05e9c6a9b09489f1066.rdb
vignettes/MCSim-intro_cache/html/unnamed-chunk-9_390053712f87c05e9c6a9b09489f1066.rdx
vignettes/SIM_RESULTS/sim.metadata_mites_neutral_model.csv
vignettes/SIM_RESULTS/sim.metadata_mites_niche_model.csv
