select.l.u: Associated taxa selected by combining lower- and upper-tail...

In songbiostat/MiAF: Microbiome Adaptive Fisher Test

Description

Associated taxa selected by combining lower- and upper-tail p-values of a test using one of abundance representations.

Usage

select.l.u(lowerlist, upperlist, com, label)

Arguments

lowerlist	The index of selected taxa by combining lower-tail p-values.
upperlist	The index of selected taxa by combining upper-tail p-values.
com	The index of selected one-sided test after combining two one-sided community-level tests. 1: the one-sided test using lower-tail p-values. 2: the one-sided test using upper-tail p-values.
label	The lables of all non-rooted nodes.

Value

A list of selected associated taxa after combining two one-sided community-level tests:

lower	Under-presented taxa based on lower-tail p-values.
upper	Over-presented taxa based on upper-tail p-values.

songbiostat/MiAF documentation built on Feb. 18, 2022, 10:29 p.m.