| add_bad_column_hosp | add_bad_column_hosp |
| add_resistance | add_resistance |
| animal_data | animal_data |
| animal_lookup | animal_lookup |
| badgroup_posterior | badgroup_posterior |
| bin_ages | bin_ages |
| check_fit | check_fit |
| defineClinical | defineClinical |
| delete_results | delete_results |
| DIC | DIC |
| DICtable | DICtable |
| filter_pathogen | filter_pathogen |
| GeomSplitViolin | https://stackoverflow.com/questions/35717353/split-violin-plot-with-ggplot2 |
| get_animal | get_animal |
| get_human | get_human |
| get_labels | get_labels |
| get_model | get_model |
| get_parameters | get_parameters |
| get_params | get_params |
| get_params2 | get_params2 |
| get_test_data | get_test_data |
| get_vars | get_vars |
| get_vars2 | get_vars2 |
| human_data | human_data |
| import_data | import_data |
| jags_data | jags_data |
| list_models | list_models |
| monitored_variables | monitored_variables |
| onlyCarbapenem | onlyCarbapenem |
| plot_antibiotics | Generate heatmap of resistance to antibiotics |
| plot_autocorr | plot_autocorr |
| plot_caterpillar | Generate caterpillar plot |
| plot_correlation | plot_correlation |
| plot_density | Generate density plot |
| plot_density2 | Generate density plot |
| plot_jags | plot_jags |
| removeCarbapenem | removeCarbapenem |
| run_custom_model | run_custom_model |
| run_SpARKjags_model | run_SpARKjags_model |
| SpARKcarbapenem-package | SpARKjags |
| summarise_samples | summarise_samples |
| testPSRF | Potential Scale Reduction Factor |
| testSSEF | Effective Sample Size |
| true_resistance | true_resistance |
| wards | wards |
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