add_bad_column_hosp | add_bad_column_hosp |
add_resistance | add_resistance |
animal_data | animal_data |
animal_lookup | animal_lookup |
badgroup_posterior | badgroup_posterior |
bin_ages | bin_ages |
check_fit | check_fit |
defineClinical | defineClinical |
delete_results | delete_results |
DIC | DIC |
DICtable | DICtable |
filter_pathogen | filter_pathogen |
GeomSplitViolin | https://stackoverflow.com/questions/35717353/split-violin-plot-with-ggplot2 |
get_animal | get_animal |
get_human | get_human |
get_labels | get_labels |
get_model | get_model |
get_parameters | get_parameters |
get_params | get_params |
get_params2 | get_params2 |
get_test_data | get_test_data |
get_vars | get_vars |
get_vars2 | get_vars2 |
human_data | human_data |
import_data | import_data |
jags_data | jags_data |
list_models | list_models |
monitored_variables | monitored_variables |
onlyCarbapenem | onlyCarbapenem |
plot_antibiotics | Generate heatmap of resistance to antibiotics |
plot_autocorr | plot_autocorr |
plot_caterpillar | Generate caterpillar plot |
plot_correlation | plot_correlation |
plot_density | Generate density plot |
plot_density2 | Generate density plot |
plot_jags | plot_jags |
removeCarbapenem | removeCarbapenem |
run_custom_model | run_custom_model |
run_SpARKjags_model | run_SpARKjags_model |
SpARKcarbapenem-package | SpARKjags |
summarise_samples | summarise_samples |
testPSRF | Potential Scale Reduction Factor |
testSSEF | Effective Sample Size |
true_resistance | true_resistance |
wards | wards |
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