build_gwas: Open a SNP GDS file and extract information.
In soroushmdg/gwid: Genome-Wide Identity-by-Descent
build_gwas R Documentation
Open a SNP GDS file and extract information.
Description
Open a SNP GDS file and extract information.
Usage
build_gwas(gds_data = "name.gds", caco = "name.Rda", gwas_generator = TRUE)
Arguments
gds_data
File name
caco
An object of class caco. Output of case_control function.
gwas_generator
logical; if TRUE an object of class result_snps
will be saved inside output list.
Value
a list of seven objects; including smp.id, snp.id, snp.pos, smp.indx,
smp.snp (a matrix with samples in rows and snp in columns), caco,
snps(column sum of smp.snp for each case control)
soroushmdg/gwid documentation built on July 27, 2024, 2:27 p.m.
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| build_gwas | R Documentation |
Open a SNP GDS file and extract information.
Description
Open a SNP GDS file and extract information.
Usage
build_gwas(gds_data = "name.gds", caco = "name.Rda", gwas_generator = TRUE)
Arguments
gds_data |
File name |
caco |
An object of class caco. Output of |
gwas_generator |
logical; if |
Value
a list of seven objects; including smp.id, snp.id, snp.pos, smp.indx, smp.snp (a matrix with samples in rows and snp in columns), caco, snps(column sum of smp.snp for each case control)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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