compare_cluster_genes: Compares Genes Expressed In Each Cluster.
In sotaro0214/seuratter: Assists The Current Single Cell RNA Sequencing Analysis Workflow
Description
Usage
Arguments
Value
Examples
Description
A function that compares and compiles all the genes identified by extract_genes_expressed() into one matrix. Does
this by determining the gene expressions that overlap between clusters and mapping that information into
the matrix.
Usage
1
compare_cluster_genes(seurat_object, min_percent)
Arguments
seurat_object
A Seurat object that has undergone the entire workflow, involving UMAP.
min_percent
A float representing the percentage of cells that have to express the gene to be
included in the result.
Value
Returns a matrix of number of clusters by number of clusters, with each matrix cell (x,y)
containing the vector of genes expressed by both clusters x and y.
Examples
1
sotaro0214/seuratter documentation built on Dec. 8, 2019, 4:24 p.m.
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Description Usage Arguments Value Examples
Description
A function that compares and compiles all the genes identified by extract_genes_expressed() into one matrix. Does this by determining the gene expressions that overlap between clusters and mapping that information into the matrix.
Usage
1 | compare_cluster_genes(seurat_object, min_percent)
|
Arguments
seurat_object |
A Seurat object that has undergone the entire workflow, involving UMAP. |
min_percent |
A float representing the percentage of cells that have to express the gene to be included in the result. |
Value
Returns a matrix of number of clusters by number of clusters, with each matrix cell (x,y) containing the vector of genes expressed by both clusters x and y.
Examples
1 |
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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